| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. P179 |
| Species | Pseudomonas sp. |
| Strain | P179 |
| Description/Title | Generic sample from Pseudomonas sp. P179 |
| Annotated Genes | 6363 |
| Partial Genes | 45 |
| Host Information | |
|---|---|
| Host Species Tissue Sampled | missing |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| sra_submissions@broadinstitute.org | |
| Institution | Broad Institute |
| Date Collected | |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | 13 |
| Contigs | 51 |
| Contig N50 | 768958 |
| Assembly Level | Scaffold |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN01779567 |
| NCBI Taxonomy ID | 1125698 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 6360 |
| CDS | 6290 |
| tRNA | 61 |
| rRNA | 9 |
| pseudo | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2837 |
| Unknown | 1496 |
| Cytoplasmic Membrane | 1382 |
| Periplasmic | 175 |
| Outer Membrane | 169 |
| Unknown (This protein may have multiple localization sites) | 153 |
| Extracellular | 78 |
| Flagellar | 17 |
| T3SS | 4 |
| Fimbrial | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |