Pseudomonas sp. GM41(2012), PMI27_001231

Gene Feature Overview

Strain	Pseudomonas sp. GM41(2012) GCF_000282315.2|latest
Locus Tag	PMI27_001231
NCBI Locus Tag	PMI27_RS20900
Name
Replicon	ctg2
Genomic location	1106333 - 1107421 (- strand)

Cross-References

RefSeq	WP_008149847.1
GI	495425150
INSDC	EUB75055.1
NCBI Locus Tag	PMI27_RS20900
NCBI Old Locus Tag	PMI27_001231
UniParc	UPI000270325A
UniProtKB Acc	W6V6J1
UniProtKB ID	W6V6J1_9PSED
UniRef100	UniRef100_W6V6J1
UniRef50	UniRef50_W0YSA6
UniRef90	UniRef90_W6V6J1

Product

Feature Type	CDS
Coding Frame	1
Product Name	type VI secretion protein
Synonyms
Evidence for Translation
Charge (pH 7)	-10.66
Kyte-Doolittle Hydrophobicity Value	-0.309
Molecular Weight (kDa)	40.9
Isoelectric Point (pI)	4.91

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000081 (1178 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PMI27_001231 Search term: type VI secretion protein

Human Homologs

References