Pseudomonas sp. GM41(2012), PMI27_001231
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCGAGAGGAGGAGCGCGGTGCCGATCAAGTGATTGCCTGGGGGCTGGATGCCGGGAATCAACAGATCAGCTACCCCGGCGAGGCCCAGCCGAACCTGC GCTGGATGGTCGGTCAACCCGTCCGGCTGACCTTGCGTTGGGCCAGAAACGGCTACCAGCGCCCGGCCAACGATCCGTTGCAGCCAAGCCTGGTCGTGCG CGATCTTGAAGCCGGTTGGGAGTACAGCGGTCCGTGGTCATTGCTGCGATTGATCCGTTCGCACCAGTCGGTGCAGCGCCAGCCGAATATGGATTACACC GATTTTCCGCTGACGTTGCGCTTGCCGGTAACGGCGCAGACCGCCACTGCTGAGCAGACCCTGATGTTTGTTCGCCTGTCGCTGATGACACAGGGCTCGA AGCTGCCGTTATCCATTCAGCCGCTGCCCACCCGAGCGCCGCGTTCGCCGTTCATGGTGACAGGGGCGACCGCGAATCTGGTGAACAATGAGGAGGGACT
|
|
| DNA Sequence for Gene |
>PMI27_001231
GTGAGCCTGCCTTCAAAACCGTTACCGGAACTGATTGTCCGGTTGCTTGAGCCGATCAGCGAGGAGGCACCTTGCGGTCAGGATTTGCGCTATGAACGTG AATTCGACCAGGCGCGTGAACTGCGCCGGGAGGACGACACGAGCCTGCCGACGGGCGTCTGGCAGTCGTCGATCAAACGGGCGCAATGGCCGGAACTGGA AAAACTGACCACGACCTTGCTGCTGGAACGCAGCAAGGACCTGATGCTCAGCGCCTGGCTCGGTGAGGCCTGGTTGCATCAGGACGGGCTGGAAGGGTTA CCGGGCAGTCTCGCGCTGGTTGCCGGGTTATGCGAACGCTATCCCGAGCATCTTCATCCTCAGGCTGAGGACGGTGATCAGTCATGGCGGGTAATACCGC TTGAATGGCTGTCCCGGCGCTACAGTGAAGTGCTACTGACCCGAGTGCCGTTGCTCGATCCGCGTAACAGCGAATTCGATGGCTTGTGTCTGGATGCCTG GCGGCGTTTGCAGTTGCAACAGGTGCTGGTCAATGACAGCAAGGCGGCGAAAGCCTCGGCGGAAACTGCGCGCAGTGAACAGAAAAAACTGACCGAACAG ATTCGTGCAACGCCCCTGTCATTCTGGTTGCGCAGCCAGGGCTGTCTGCTGATGAGCCTGCAACATCTGCAACGGCTGGAAGGCTGGAGCGATGCCTATC TCGGCACTCAGGCCCCGGGCTTCAAAGCCTTGCAGGACGTGATCGAGGCGCTATTGACGCTGGTCCAGGAGTTCATTGCCATGCACCCACGACAGTCAAC CGAGGTACCTGTCGGGGCGCCACCCGTGGCGGTGTCCGGACCAGTCGATTTGCCGCAAGCGACATCGGCGCCTCAGGTGTTTCGCGAGCCGGCGAGTCGC GACGAGGCGTATCGACAATTGCTATTGATTGCCGAGTACCTGGCGCGCACCGAACCCCACAGCCCTGTCCCGTACTTGATCAAGCGCGGGGTGGAGTGGG GCAACAAACCTCTAAGCGAACTGTTGGGCGAACTGATCTCGGCTGATGCCGAATCCCGGCGCCTGTGGACGCTGTTGGGCGTCCTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCAGCGAAATGGCACGGCCATGATCGGTGCGGGCAAGGCAATGGGCGTCAACACCTGCTGACCGGAAAAGAACGCCACCAGGTTTTTCCCGGCCAGTTCA ACAGTCCCTTGCGTTGCCTCCGGGGACAGCCCCGCGACATGGGGCGTCAGGATCACGTTGGTCAACGCCTTGAGTGCATCCGGCACATGAGGTTCGGCGT CGAACACATCCAGTGCGGCGCCGGCAATGCGTCGCTGCTCAAGCGAGCTGATCAGGTCGGCGGTGACGATCACGCTGGCTCGGGCGATATTGACGATGAA CCCCTGTGGGCCCAAGGCGTCGAGAACCTGTCGGTTGATCAGGTGTTTGGTACCCAGGCCACCGGGGGTGGCGACGACCAAAAAGTCTGATTCGCGTGCC AGTTCGGTGGGCGTTGAGCGGAAACTGTACGGCACATCGCTGCGATGCTGGCGGTTGTGGTAACTGACCGTCATGTCGAAGCCGTGGGCGGCGCGTTTGG
|
|
| Amino Acid Sequence |
>type VI secretion protein
MSLPSKPLPELIVRLLEPISEEAPCGQDLRYEREFDQARELRREDDTSLPTGVWQSSIKRAQWPELEKLTTTLLLERSKDLMLSAWLGEAWLHQDGLEGL PGSLALVAGLCERYPEHLHPQAEDGDQSWRVIPLEWLSRRYSEVLLTRVPLLDPRNSEFDGLCLDAWRRLQLQQVLVNDSKAAKASAETARSEQKKLTEQ IRATPLSFWLRSQGCLLMSLQHLQRLEGWSDAYLGTQAPGFKALQDVIEALLTLVQEFIAMHPRQSTEVPVGAPPVAVSGPVDLPQATSAPQVFREPASR DEAYRQLLLIAEYLARTEPHSPVPYLIKRGVEWGNKPLSELLGELISADAESRRLWTLLGVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|