Pseudomonas sp. GM41(2012), PMI27_000875

Gene Feature Overview

Strain	Pseudomonas sp. GM41(2012) GCF_000282315.2|latest
Locus Tag	PMI27_000875
NCBI Locus Tag	PMI27_RS22610
Name
Replicon	ctg2
Genomic location	661632 - 664814 (- strand)

Cross-References

RefSeq	WP_008156375.1
GI	495431680
INSDC	EUB74699.1
NCBI Locus Tag	PMI27_RS22610
NCBI Old Locus Tag	PMI27_000875
UniParc	UPI0002701216
UniProtKB Acc	W6VP93
UniProtKB ID	W6VP93_9PSED
UniRef100	UniRef100_W6VP93
UniRef50	UniRef50_Q880Q4
UniRef90	UniRef90_Q880Q4

Product

Feature Type	CDS
Coding Frame	1
Product Name	transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-8.91
Kyte-Doolittle Hydrophobicity Value	0.309
Molecular Weight (kDa)	114.9
Isoelectric Point (pI)	5.53

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name	Definition	Accession	Model Type (?)	SNP	Cutoff	Bit Score	Percent Identity	CARD Version
adeF	AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879]	ARO:3000777	protein homolog model		Strict	1336.6	66.41	3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000417 (2093 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PMI27_000875 Search term: transporter

Human Homologs

References