Pseudomonas sp. VLB120, PVLB_25105

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_25105
Name
Replicon chromosome
Genomic location 5511760 - 5513868 (+ strand)

Cross-References

RefSeq YP_008765927.1
GI 557225712
Entrez 17499660
INSDC AGZ37800.1
NCBI Locus Tag PVLB_25105
UniParc UPI0003C08B1D
UniProtKB Acc U5VPV8
UniProtKB ID U5VPV8_9PSED
UniRef100 UniRef100_U5VPV8
UniRef50 UniRef50_D7HTS2
UniRef90 UniRef90_D7HTS2

Product

Feature Type CDS
Coding Frame 1
Product Name
(p)ppGpp synthetase I SpoT/RelA
Synonyms
Evidence for Translation
Charge (pH 7) 14.54
Kyte-Doolittle Hydrophobicity Value -0.219
Molecular Weight (kDa) 78.6
Isoelectric Point (pI) 8.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 575 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004907 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_25105

Human Homologs

References

No references are associated with this feature.