Pseudomonas sp. VLB120, PVLB_13305

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_13305
Name
Replicon chromosome
Genomic location 2946474 - 2947856 (+ strand)

Cross-References

RefSeq YP_008763574.1
GI 557223359
Entrez 17497263
INSDC AGZ35447.1
NCBI Locus Tag PVLB_13305
UniParc UPI0003C0750D
UniProtKB Acc U5VF04
UniProtKB ID U5VF04_9PSED
UniRef100 UniRef100_U5VF04
UniRef50 UniRef50_G8Q7L2
UniRef90 UniRef90_I7BA31

Product

Feature Type CDS
Coding Frame 1
Product Name
sigma-54 dependent transcription regulator
Synonyms
Evidence for Translation
Charge (pH 7) -0.18
Kyte-Doolittle Hydrophobicity Value -0.103
Molecular Weight (kDa) 50.3
Isoelectric Point (pI) 6.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 460 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003271 (473 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_13305

Human Homologs

References

No references are associated with this feature.