Pseudomonas sp. VLB120, PVLB_08215 (clpP)

Gene Feature Overview

Strain	Pseudomonas sp. VLB120 GCF_000494915.1|latest
Locus Tag	PVLB_08215
Name	clpP
Replicon	chromosome
Genomic location	1865763 - 1866404 (+ strand)

Cross-References

RefSeq	YP_008762570.1
GI	557222355
EC Number	3.4.21.92
Entrez	17496252
INSDC	AGZ34443.1
NCBI Locus Tag	PVLB_08215
UniParc	UPI000000F244
UniProtKB Acc	U5VBN9
UniProtKB ID	U5VBN9_9PSED
UniRef100	UniRef100_A5W635
UniRef50	UniRef50_Q9I2U1
UniRef90	UniRef90_B0KJG6

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent Clp protease proteolytic subunit
Synonyms
Evidence for Translation
Charge (pH 7)	-3.90
Kyte-Doolittle Hydrophobicity Value	-0.135
Molecular Weight (kDa)	23.5
Isoelectric Point (pI)	5.63

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 582 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003596 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PVLB_08215 Search term: clpP Search term: ATP-dependent Clp protease proteolytic subunit

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000245816 caseinolytic mitochondrial matrix peptidase proteolytic subunit [Source:HGNC Symbol;Acc:HGNC:2084] E-value: 6.6e-62 Percent Identity: 58.8

References