Pseudomonas sp. VLB120, PVLB_03545

Gene Feature Overview

Strain	Pseudomonas sp. VLB120 GCF_000494915.1|latest
Locus Tag	PVLB_03545
Name
Replicon	chromosome
Genomic location	809289 - 811394 (+ strand)

Cross-References

RefSeq	YP_008761643.1
GI	557221428
Entrez	17495289
INSDC	AGZ33516.1
NCBI Locus Tag	PVLB_03545
UniParc	UPI0003C0BA45
UniProtKB Acc	U5VCX0
UniProtKB ID	U5VCX0_9PSED
UniRef100	UniRef100_U5VCX0
UniRef50	UniRef50_P41121
UniRef90	UniRef90_A4XYD6

Product

Feature Type	CDS
Coding Frame	1
Product Name	polynucleotide phosphorylase/polyadenylase
Synonyms
Evidence for Translation
Charge (pH 7)	-17.14
Kyte-Doolittle Hydrophobicity Value	-0.058
Molecular Weight (kDa)	75.2
Isoelectric Point (pI)	4.91

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 661 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004385 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PVLB_03545 Search term: polynucleotide phosphorylase/polyadenylase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000400646 polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166] E-value: 7.9e-112 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000393953 polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166] E-value: 7.9e-112 Percent Identity: 35.8

References