Pseudomonas sp. VLB120, PVLB_00295

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_00295
Name
Replicon chromosome
Genomic location 63951 - 65294 (+ strand)

Cross-References

RefSeq YP_008760996.1
GI 557220781
Entrez 17494626
INSDC AGZ32869.1
NCBI Locus Tag PVLB_00295
UniParc UPI000000E9A3
UniProtKB Acc U5V7V7
UniProtKB ID U5V7V7_9PSED
UniRef100 UniRef100_A0A088NSF8
UniRef50 UniRef50_A0A024HAV0
UniRef90 UniRef90_R9V2S8

Product

Feature Type CDS
Coding Frame 1
Product Name
porin
Synonyms
Evidence for Translation
Charge (pH 7) -7.04
Kyte-Doolittle Hydrophobicity Value -0.445
Molecular Weight (kDa) 49.4
Isoelectric Point (pI) 5.04

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 17 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000187 (1579 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_00295
Search term: porin

Human Homologs

References

No references are associated with this feature.