Pseudomonas monteilii SB3078, X969_12915 (ligD)

Gene Feature Overview

Strain	Pseudomonas monteilii SB3078 GCF_000510285.1|latest
Locus Tag	X969_12915
Name	ligD
Replicon	chromosome
Genomic location	2672247 - 2674739 (+ strand)

Cross-References

RefSeq	YP_008954890.1
GI	568182273
EC Number	6.5.1.1
Entrez	17999218
NCBI Locus Tag	X969_12915

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7)	15.94
Kyte-Doolittle Hydrophobicity Value	-0.474
Molecular Weight (kDa)	92.6
Isoelectric Point (pI)	9.39

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 294 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003336 (490 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: X969_12915 Search term: ligD Search term: ATP-dependent DNA ligase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000514670 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000263274 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000442841 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514663 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000471861 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514671 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514664 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514667 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8

References