Pseudomonas aeruginosa SCV20265, SCV20265_6100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa SCV20265
GCF_000510305.1|latest |
| Locus Tag |
SCV20265_6100
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 6499089 - 6500774 (- strand) |
Cross-References
| RefSeq | YP_008985096.1 |
| GI | 568312827 |
| EC Number | 1.1.99.1 |
| Entrez | 18076047 |
| NCBI Locus Tag | SCV20265_6100 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Choline dehydrogenase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -0.59 |
| Kyte-Doolittle Hydrophobicity Value | -0.410 |
| Molecular Weight (kDa) | 61.9 |
| Isoelectric Point (pI) | 6.92 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 215 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004937 (526 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: SCV20265_6100
Search term: Choline dehydrogenase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
choline dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24288]
E-value:
6.9e-143
Percent Identity:
49.4
|
References
No references are associated with this feature.