Pseudomonas aeruginosa SCV20265

Strain Overview
Organism Name Pseudomonas aeruginosa SCV20265
Species Pseudomonas aeruginosa
Strain SCV20265
Description/Title General Sample for Pseudomonas aeruginosa SCV20265
Annotated Genes 6380
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Germany: Hannover, Hannover Medical School
Isolation Source lung
Sample Provider
Name Denitsa Eckweiler
E-mail denitsa.alamanova@googlemail.com
Institution Helmholtz Center for Infection Research
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 299
trpE
3		 mutL
3		 aroE
5		 ppsA
7		 acsA
17		 nuoD
3		 guaA
36
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000510305.1
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6725183
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02415141
NCBI Taxonomy ID 1427342
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa SCV20265, complete genome.

Annotated Features

Feature Count
gene 6374
CDS 6299
tRNA 63
rRNA 12
pseudo 6

Subcellular Localization

Localization Count
Cytoplasmic 2734
Cytoplasmic Membrane 1374
Periplasmic 170
Outer Membrane 171
Extracellular 74
Unknown 1630
Unknown (This protein may have multiple localization sites) 146
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa SCV20265, complete genome. 6725183 bp 66.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF