Pseudomonas aeruginosa SCV20265, SCV20265_5087
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa SCV20265
GCF_000510305.1|latest |
| Locus Tag |
SCV20265_5087
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 5391129 - 5391596 (+ strand) |
Cross-References
| RefSeq | YP_008984087.1 |
| GI | 568311818 |
| Entrez | 18075036 |
| NCBI Locus Tag | SCV20265_5087 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
LptA, protein essential for LPS transport across the periplasm
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 1.99 |
| Kyte-Doolittle Hydrophobicity Value | -0.543 |
| Molecular Weight (kDa) | 17.0 |
| Isoelectric Point (pI) | 9.28 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 4UU4 | TRANSPORT PROTEIN | 07/24/14 | Crystal structure of LptH, the LptA homologous periplasmic component of the conserved lipopolysaccharide transport device from Pseudomonas aeruginosa | PSEUDOMONAS AERUGINOSA | 2.751 | X-RAY DIFFRACTION | 100.0 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 126 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004049 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: SCV20265_5087
|
Human Homologs
References
No references are associated with this feature.