Pseudomonas sp. URMO17WK12:I3, H038_RS0106645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. URMO17WK12:I3
GCF_000514255.1|latest |
| Locus Tag |
H038_RS0106645
|
| Name |
|
| Replicon | scaffold00005.5_C |
| Genomic location | 447213 - 448706 (+ strand) |
Cross-References
| RefSeq | WP_027904019.1 |
| GI | 654433311 |
| NCBI Locus Tag | H038_RS0106645 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
EvpB family type VI secretion protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -15.00 |
| Kyte-Doolittle Hydrophobicity Value | -0.467 |
| Molecular Weight (kDa) | 55.7 |
| Isoelectric Point (pI) | 5.11 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 5N8N | STRUCTURAL PROTEIN | 02/23/17 | Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 95.0 |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000083 (1225 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: H038_RS0106645
Search term: EvpB family type VI secretion protein
|
Human Homologs
References
No references are associated with this feature.