Pseudomonas sp. URMO17WK12:I3, H038_RS0106645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCGCGCAACCGCGCCCCGCGGGTGCAGATCGAGTACGACGTGGAGCTGTACGGCGCCGAGAAAAAGGTGCAGTTGCCCTTCGTCATGGGCGTGATGGC CGACCTCGCCGGCAAGCCGGAAGAGCCGTTGGCCGCCGTCGCCGACCGCAAGTTCCTGGAAATCGACGCCGACAACTTCGACTCGCGCCTCAAGGCCATG AAGCCGCGCGCGGCCTTCCACGTGCCCAACGCGCTGACCGGTGAAGGAAACCTGAGCCTGGACATCACCTTCGAGAGCATGGACGACTTCAGCCCGGCGG CCATCGCCCGTAAGGTCGACTCGCTCAACCAGCTGCTCGAAGCGCGCACCCAGCTCGCCAACCTGCTGACCTACATGGACGGCAAGACCGGCGCCGAAGA GCTGATCATCAAGGCGATCAAGGACCCGGCCCTGCTGCAGGCCCTGGCCAGTGCGCCCAAGCCCCAAGACAACGAGCCGCAAGCCTAAGAGGACGCCACC
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| DNA Sequence for Gene |
>H038_RS0106645
ATGAGCCAACAGACCCAGGCGTCCGAACAGTCGCTCGCCACCTCCGAACAGACCAGCGAATTCGCCTCGCTGCTGCTGCAGGAATTCAAACCCAAGACCG AGCGCGCCCGTGAAGCGGTGGAAACCGCCGTGCGCACCCTGGCCGAGCATGCCCTGAGCAAGACCGACCTGATCTCCGACGACGCCATCAAGTCGGTGGA ATCGATCATCGCCGCGATCGACGCCAAGCTCACCGCCCAGGTCAACCTGATCATGCACCACCCGGACTTCCAGCAGCTGGAAAGCGCCTGGCGTGGCCTG CACTACCTGGTCAACAACACCGAGACCGACGAGCAGCTGAAGATTCGCGTGCTCAACATCTCCAAGCCCGAACTGCACAAGACCCTGAAGAAATTCAAGG GCACCGCCTGGGACCAGAGCCCGATCTTCAAGAAGCTCTACGAAGAGGAATACGGTCAGTTTGGTGGCGAGCCCTACGGCTGCCTGGTGGGCGACTACTA CTTCGACCAGTCGCCGCCCGACGTCGAACTGCTCGGCGAGATCGCCAAGATCTCCGCAGCCATGCACTCGCCGTTCATTTCCGCGGCCTCGCCGACGGTC ATGGGCATGGGTTCCTGGCAGGAGCTGTCCAACCCGCGCGACCTGACCAAGATCTTCACCACGCCCGAATACGCCGGCTGGCGCTCGCTGCGTGACTCCG AAGACTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTGGCGCGCCAGCCCTACGGCGCGAAGACCGATCCGGTCGAAGAGTTCGCCTTCGAGGAAGA AACCGACGGCGCCGACAGCAGCAAGTACACCTGGGCCAACTCGGCGTACGCCATGGCGGTCAACATCAACCGTTCGTTCAAGCTCTACGGCTGGTGCTCG CGCATCCGCGGCGTGGAGTCAGGCGGTGAAGTGCCGAACCTGCCGGCGCACACCTTCCCCACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCGAGA TCGCCATCTCCGACCGCCGCGAGGCCGAGCTGGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAGAACACCGACCTGGCCGCCTTCATCGGCGCCCA GTCGCTGCACAAGCCGGCCGAGTACGACGATCCGGACGCCACCGCCAACGCCAACTTGGCCGCGCGCCTGCCGTACCTGTTCGCCACCTGCCGCTTCGCC CACTACCTGAAGTGCATCGTGCGCGACAAGATCGGCTCGTTCAAAGAGCGCGACGAGATGCAGCGCTGGTTGCAGGACTGGATCCTCAACTACGTCGACG GTGACCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCACCCGCTGGCCGAAGCCGAGGTGGTGGTCGAGGAGATCGAGGGCAACCCGGGTTACTACAG CTCCAAGTTCTATCTGCGCCCGCACTACCAGCTCGAAGGGCTGACCGTGTCGCTGCGTCTGGTATCCAAACTGCCTTCGGCCAAGGGGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTCGTCACTGTGGCGCCCGCATTGGCGGGCGTAGCTGAAACAGAGTGGCAAAAGCCACGAAAGGAGGAATGATGGCTGTTGATATGTTCATCAAGATT GGCGACGTCAAGGGTGAGTCCAAGGACAAGGCCCACGCTGACGAAATCGACGTACTGGCCTGGAGCTGGGGCATGAGCCAGTCCGGCTCCATGCATGTCG GCGGTGGCGGCGGTGCCGGCAAGGTCAATATCCAGGATCTGTCGCTGACCAAGTACGTCGACAAGTCCAGCCCCAACCTGATGATGGCCTGCTCCAGTGG CAAGCATTATCCGGAAGCCAAACTGACCGTTCGCAAGGCCGGCGGCGACTCCCAGGTCGAGTACCTGATCATCACCCTGAAGGAAGTGCTGGTGTCGTCC ATCAGCACCGGCGGCAGCGGTGGCGAAGATCGCCTGACCGAGAACGTCACCCTGAACTTCGCTCAGGTGCTGGTCGACTACCAACCGCAGAAAGCCGACG
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MSQQTQASEQSLATSEQTSEFASLLLQEFKPKTERAREAVETAVRTLAEHALSKTDLISDDAIKSVESIIAAIDAKLTAQVNLIMHHPDFQQLESAWRGL HYLVNNTETDEQLKIRVLNISKPELHKTLKKFKGTAWDQSPIFKKLYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGEIAKISAAMHSPFISAASPTV MGMGSWQELSNPRDLTKIFTTPEYAGWRSLRDSEDSRYIGLTMPRFLARQPYGAKTDPVEEFAFEEETDGADSSKYTWANSAYAMAVNINRSFKLYGWCS RIRGVESGGEVPNLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDLAAFIGAQSLHKPAEYDDPDATANANLAARLPYLFATCRFA HYLKCIVRDKIGSFKERDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAEAEVVVEEIEGNPGYYSSKFYLRPHYQLEGLTVSLRLVSKLPSAKGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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