Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS27890 (choX)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCATGGGCCCGACGGTGTGAGAACTGGAGGGGCCGATGCCGATTTTGAACAGATCGAAAACACTGATAGCCATGACTGCGAAACTCCTCGATGAGCACA CGCCGGGCGCCAAAACGCCCGGTGGCGAAGCTGCTACGCTCAAGCAGTAATCCGCCGAGATACGCGCATCATCAGGCTTTTGCAGTGTCGTTCGACGTCT CACACCGACTCACTCATGCCCACCAACGCCGTGGCCCGCCGACCTCCGGTTTCGGCCGTTTTTTTGCGGTTCAGATGGGCAAAAAGTGCTGAAAAAAGCT GTAAGCGACCTCACCGACACTGGATGCGACCCTCCCTGTACTGGATACGACGCACCCTGTAGGCGTCAGATTTTCACTGGTACATGATCAGTCTCGACTC GATTGCAAGGCACTGTGGTAGAGCTGTCCCACTCGCCCCAACCGCAACACTTATAAGTGCGGTCAGATACACCGCCAGAAAACACCCAGGAGTCCACCCC
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| DNA Sequence for Gene |
>PCHL3084_RS27890
|choX
ATGAAAGGTTCCCCGTCGTTGTTGTTGGCCGCCATGCTGAGTCTGCCGCTTCTGGCGCACGCCGCAGAACCGGCGCAATGCAGCACCGTAAACTTCTCCG ATGTCGGCTGGACCGACATCACCGTCACCACCGCGACCACCAGCGTCGTTCTCGATGCCCTTGGCTACAAGACCAAGACCACGATGATTTCCGTGCCGGT GACCTACAAGTCCCTGGCCGATGGCAAGAACATGGATGTGTTCCTCGGCAACTGGATGCCGACCATGGAAAACGACATCAAGCCCTACCGCGATGCCGGC ACCGTGGAAACCATCCGCGCCAACCTGGAGAACGCCAAGTACACCCTGGCGGTCCCGGAAGAGCTGTACAACAAGGGCCTGAAGGATTTCGCCGACATCG CCAAGTTCAAGAAAGAACTGGACGGCAAGATCTACGGCATCGAGCCGGGTAACGACGGCAACCGCATGATCCAGAGCATGATCGACAAGAACGCCTTCGG CCTCAAGGACGCCGGCTTCAAGGTGGTCGAGTCCAGCGAGGCGGGCATGCTGTCCCAGGTCGAGCGCGCGCAACGGCGCAGCACCGCGGTGGTGTTCCTG GGCTGGGAACCGCACCCGATGAACACCCGTTTCAAGATGAAGTACCTGACCGGTGGCGACGAGTTCTTCGGCCCCAACTACGGCCAGGCGACTATCTACA CCAACACCCGCAAGGGCTACGCCGAGGAATGCAGCAACGTTGGTCAGTTGCTGAAGAATCTGTCGTTCACCCTGAACATGGAAAGCACCCTGATGGGTAA CGTCCTGGACGACAAGATGAAGCCCGAGGCGGCCGCCAAGGCCTGGCTGAAGAAAAACCCCGAGGTACTCGATACCTGGCTCGCTGGCGTGACCACCATT GACGGAAAACCTGGCCTGGAGGCCGTGAAAGCCAAGCTTGCACAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGCTTATGCCGGGCGGGGTCGCCCGCCCGGGCTGTTTATTCCTTGCATGCGGACGTTCAATACCATGCTCATTGATCAGAAAATCCCTTTAGGCCAGT ACATCGCTGCCTTCGTCGAATGGTTGACGCAACACGGCGCCAACACATTCGATGCGATCGCATCGACCCTGGAAACGATGATCCACGGCGTGACGTTTGC GCTGACCTGGTTCAACCCCCTGGCCTTGATCGGCCTGATTGCCTTGCTGGCGCACATCATTCAACGCAAATGGGGCCTGACGGCCTTCGTCGTGCTGTCC TTCCTGCTGATTCTCAATCTGGGTTACTGGCAGGAAACCATGGAAACCCTGGCCCAGGTGCTGTTCGCCACCCTGGTCTGCGTGCTCATTGGCGTGCCGT TGGGCATCGTCGCCGCGCACAAGCCAATGTTCTACACCATGATGCGTCCGGTGCTCGATCTGATGCAGACCGTGCCGACCTTCGTTTACCTCATTCCTAC
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| Amino Acid Sequence |
>glycine/betaine ABC transporter substrate-binding protein
MKGSPSLLLAAMLSLPLLAHAAEPAQCSTVNFSDVGWTDITVTTATTSVVLDALGYKTKTTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYRDAG TVETIRANLENAKYTLAVPEELYNKGLKDFADIAKFKKELDGKIYGIEPGNDGNRMIQSMIDKNAFGLKDAGFKVVESSEAGMLSQVERAQRRSTAVVFL GWEPHPMNTRFKMKYLTGGDEFFGPNYGQATIYTNTRKGYAEECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPEAAAKAWLKKNPEVLDTWLAGVTTI DGKPGLEAVKAKLAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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