Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS15075 (arnB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGTGGCGTGCAAATGGATGCTCCTTGGTTCAGGTGGTGCTTGAAAAACAGTGGTATCTGCAAAGGCAAAAAACCTCTCTCGGTCAAGCGACTTTCATC CATGTTATCCGCGAAAAAGAACACCTTGGGGATGCTGTAACAGGGGTTTTCCCGATCAACTAGTGGCGAAGTCTGAACACTGGCTGTCTAGGTGAAAGAT AAACGCTCCGTTGGCCTTTTTTTCATGTTCGTTTCACATTTTTCCGCTTAACCTGAATCCATTCATAGACGCAGGAAATCACTCAGGCCATCTAATTGAA CAAAAGCTAACATACTGATCTGGCTTTACTTTTACCCTGCGTGGTCTTTACTGCAATCAAGCATGGACGACCGCACCGACCTCACTTATGGACGCGCTTC AATGACCGAACCAAAAACGCCTTTTTTGAATAACTCCAGCTGTGGCACAGGCGCTTTTTCTTCTTTCGATTGCTGAAATCCTTTTTCCCCCGAGGTCTCA
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| DNA Sequence for Gene |
>PCHL3084_RS15075
|arnB
ATGAACCAGGCTTTCCTTCCTTTCTCGCGCCCGAGTATTGGCGATGAAGAGATCGCTGCGGTCGAGCAGGTTCTACGTTCTGGCTGGATCACCACCGGAC CGAAAAACCAGGAGCTCGAGCAGCAATTCGCCGCGCGGGTCGGCTGCAAGCACGCAGTGGCGCTGTCATCGGCCACCGGGGGCATGCACATTACCCTGCT GGCGCTGGGCATCGGCCCCGGCGATGAGGTGATCACCCCCTCGCAGACCTGGGTTTCCACCGCCAACATGATCTGCCTGTTGGGTGCGACTCCGGTCTTC GTCGATGTCGATCCGCACACCCTGATGACCGACGCCGCCACGGTTGAAGCGGCGATCACACCGCGGACCAAGGCGATCATCCCGGTGCATTACGCCGGTG CCGCCTTCGACCTCGATCCGCTGTACGTCCTGGCCGACAAACATGGCATCGCAGTGATCGAAGACGCCGCCCACGCCGCCGGCACCAGCTATCGCGGCCG GCCTGTCGGCGCCCAGGGCACGGCGATCTTTTCCTTCCATGCGATCAAGAACATGACCTGCGCCGAAGGCGCGATGTTCGTCAGCGACGACGAGGCCCTG GCCAGCCGGGTGCGCATGCTCAAGTTCCATGGCCTGGGCGTCGATGCCTATGACCGCCTGACCCACGGGCGCAAGCCCCAGGCCGAGGTGATCGAGCCCG GCTTCAAATACAACCTGGCGGATATCAATGCCGCCATCGCCCTGGTGCAGTTGCAGCGGCTGGATGCGATCAATCACCAGCGCGAGGTCCTGGCCAATGC CTACCTGGAACAACTGCGCGACCTGCCGGTGCAACCGCTGCACCTGCCACAGTATCCGCAGCAACATGCCTGGCACCTGTTCATCCTGCGCATCGACGCC GAGCGTTGCGGCATCGATCGCGACGGCTTCATGAAGGCCCTGCAGGAGCAGAACATCGGCAGCGGCATCCACTTCGTCGCCACTCACCTGCACAGCTATT ACCGCCAGCGCTTCCCGGATGTGCATTTACCCAACACCGAATGGAACTCGGCACGCCTGTGCTCGATTCCGCTGTTCCCCGACATGACCCTCGACGATGT CGAGCGGGTCGTCGGCGCCATCAAAACCTGTCTGGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCTTGAAACCTTATCCAATCCAGTTCGTGTCGATCGTCATTCCGGTCTACAACGAAGAAGAAAGCCTGCCCGAACTGCTGCGGCGCACTGAAGCGGCC TGTCGCCAGCTCAAGCACGATTTCGAGATCGTCCTGGTGGACGATGGCAGCCGCGACGAATCGGCACAGATCCTCGAGGAAGCGGCCGGCCGCGAAGGCA GCCCGGTGGTGGCGGTGATCCTCAACCGCAACTACGGCCAGCACGCGGCGATCATGGCCGGTTTCGAGCAATGCCGTGGCGACGTAATCATCACCCTGGA CGCCGACCTGCAGAACCCGCCGGAAGAAATCCCGCGCCTGGTGGCCCAGGCCGAGCTGGGCTACGACGTGGTCGGCACGGTGCGCAACAACCGCCAGGAC TCCGCCTGGCGCCGCTGGCCGTCGAAGCTGATCAACCTCGCCGTGCAACGCTCCACTGGCGTGGCCATGAACGACTACGGCTGCATGCTGCGCGCCTACC
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| Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase
MNQAFLPFSRPSIGDEEIAAVEQVLRSGWITTGPKNQELEQQFAARVGCKHAVALSSATGGMHITLLALGIGPGDEVITPSQTWVSTANMICLLGATPVF VDVDPHTLMTDAATVEAAITPRTKAIIPVHYAGAAFDLDPLYVLADKHGIAVIEDAAHAAGTSYRGRPVGAQGTAIFSFHAIKNMTCAEGAMFVSDDEAL ASRVRMLKFHGLGVDAYDRLTHGRKPQAEVIEPGFKYNLADINAAIALVQLQRLDAINHQREVLANAYLEQLRDLPVQPLHLPQYPQQHAWHLFILRIDA ERCGIDRDGFMKALQEQNIGSGIHFVATHLHSYYRQRFPDVHLPNTEWNSARLCSIPLFPDMTLDDVERVVGAIKTCLD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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