Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS14290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGCGTGCTCTATGAAAGCTACATTCACCCGCTGACCATTCTCTCCACGCTGCCGTCGGCCGGGGTCGGCGCCTTGCTGTCGATCTATGTGC TGGGCGGCGAGTTCAGCCTGATCTCGCTGCTGGGCTTGTTCCTGTTGATCGGGGTGGTGAAGAAGAACGCCATCCTGATGATCGACCTGGCGTTGCAGCT GGAGCGTCACCAGGGCCTGGGCCCGCTGGAGTCGATCCGCAGCGCCTGCCTGCTGCGCCTGCGGCCGATCCTGATGACCACCCTGGCGGCGATCCTCGGC GCCTTGCCGTTGCTGCTCGGCAGCGCCGAAGGCGCGGAAATGCGCCAGCCCCTGGGCCTGACCATTATCGGCGGCCTGGTCTTCAGCCAGGTCCTGACCC TCTACACCACCCCGGTGGTCTACCTCTATCTCGATCGCCTGCGCCATAAATTCAACCACTGGCGTGGGGTCCGTACCGATGCCGCTCTGGAAACGCCGCT
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| DNA Sequence for Gene |
>PCHL3084_RS14290
ATGACTGACTGCTCGCCCCGCAACCTTCCTCAGCGCCTGGCCCTGGCCCGCGGTTCGCGGCTGCTGAGCCTGAGCTTGAGCCTGGCGCTGCTCAGTGCCT GCGCCATTGGCCCGGACTACCAGCGCCCGACCGTCGCCGAGCCCGCGCACTACAAGGAAGCAGCAGGCTGGCGCCAGGCCAGCCCCAGCGATTCCCTGGC CCGCGGCGCCTGGTGGGAGCTGTACGGCGACCGCCAGCTCAACGGCCTGATCGACAAGCTCAACAGCGCCAACCAGAGCGTGGCGCAGTCCGAGGCCCAG TACCGCCAGGCCCAGGCCCTGGTGCGCAGCGCCCGTGGCTCGCTGTTCCCCACGGTCGACCTGAGCGCCGGGAAAACCCGCGCCAGCCAGGGCACCGGCA GCAGCAGCTCGGCCCTGAGCAGTTCCTCCAGCGGCATTCGCGACACTTACAACACCCAGCTCGGGGTGAGCTGGGAGGCCGATGTCTGGGGCAAGCTGCG CCGCGGCCTGGAAGCCAACGAAGCCAGCGCCGAAGCCAGCTTCGCCGACCTCGCGGCGATGCGCCTGAGCCAGCAGTCGGAGCTGGTGCAGAACTACCTG CAACTGCGGGTCATGGACCAGCAGAAGCGCCTGCTCGAAGCCACGGTGGCGGCCTACCAGCGTTCGCTGACCATGACCGAGAATCAGTACCGCGCCGGGG TGTCCGGCAAGGACGCGGTGGCCCAGGCGCAAACCCAGCTGAAAACCACCCAGGCCGACCTGATCGACCTGATCTGGCAGCGCGCCCAGCTGGAAAACGC CATCGCGGTGCTGATCGGCCTGCCGCCGGCCGAGTTCAGCCTGGCCGAGACCCAGGACATCCCGGCCTTGCCCCAGGTGCCGTTGAGCCTGCCGTCGCAG CTGCTGGAACGGCGCCCGGACATCGCCTCGGCCGAGCGTTCGGTGATCGCCGCCAACGCCAATATCGGCGTGGCCAAGGCCGCCTATTACCCGGACCTGA CCCTGAGCCTGGCGGGCGGCTACAGCAGCAGTACCTATGCCGACTGGATCAGCCTGCCGAACCGCTTCTGGTCGGTGGGGCCGAAACTGGCCATGACCCT GTTCGACGGCGGCCAGCGTTCGGCGGAAGTCGACCGCACCGAGGCGGCCTACGACCAGACCGTGGCCAAGTACCGCCAGACCGTGCTCGACGGCTTTCGC GAGGTGGAGAACTACCTGGTGCAGCTCAAGGTCCTGGAAGACGAAGCCGCGGTGCGCCAGCAGGCCCTGGATTCGGCGCGCGAGTCGTTGCGCCTGACCG AGAACCAGTACAAGGCCGGGGTGATCGCCTACCTGGACGTGGTGGTGGTGCAGGCCACGGCGTTGAGCAACGAACGCAGCGTGCTGAGCCTGCTGCAAAG CCGGCTGGTCACCAGCGTGCAACTGATCGCCGCCCTCGGCGGCGGCTGGGACGGCCAGCTGCAGGCCAGCAAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGCAGAATCCGCGATCCGCCTGTTTTTCGCAGGCTGCGAACGGTTCGCGCAGCGACCGCAAACCCTGAATCCGCGCTCCATCTGGCCTCACACGTTGT CCGTCCTACGACCGCTACGCGCTCGATCGCAGGCCGCGCCAGCGGCTACGTCGATAGCGGCGTCCCTGGCGTTGTGTCACTGTTGCCAGCGGTCGAGTCG CTGTAACCGGTTTGTTTTATCAAGCGGCTACTTTCGTCCGACTGATGGCTTTTTGCTTACTTTGTGAGTGTGTTTCTGTACGCAAGCAGTACAATTGCGC CTTTTTACCGCCGGGCATGGACGCTTCCGGCTAACGCCACGAGACGTTCATGCTCACCGGTACCTACTCTCCCGCCCTGGTTCTGATTTCCCTGTTTGTG GCGATTCTCGCCTCTTACACCGCACTCGACCTGACCGGTCGCATCGCCACCACGCGTGGTCGAGCGGCACTTTTGTGGATGGCCGGCGGCGCCCTGGCCA
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| Amino Acid Sequence |
>RND transporter
MTDCSPRNLPQRLALARGSRLLSLSLSLALLSACAIGPDYQRPTVAEPAHYKEAAGWRQASPSDSLARGAWWELYGDRQLNGLIDKLNSANQSVAQSEAQ YRQAQALVRSARGSLFPTVDLSAGKTRASQGTGSSSSALSSSSSGIRDTYNTQLGVSWEADVWGKLRRGLEANEASAEASFADLAAMRLSQQSELVQNYL QLRVMDQQKRLLEATVAAYQRSLTMTENQYRAGVSGKDAVAQAQTQLKTTQADLIDLIWQRAQLENAIAVLIGLPPAEFSLAETQDIPALPQVPLSLPSQ LLERRPDIASAERSVIAANANIGVAKAAYYPDLTLSLAGGYSSSTYADWISLPNRFWSVGPKLAMTLFDGGQRSAEVDRTEAAYDQTVAKYRQTVLDGFR EVENYLVQLKVLEDEAAVRQQALDSARESLRLTENQYKAGVIAYLDVVVVQATALSNERSVLSLLQSRLVTSVQLIAALGGGWDGQLQASKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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