Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS07485

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCAATGCCCGCGTCGCGCGCCGCCTCGGACGAATAGCGCTGGCTATTGCCGATGATCTGGTGGTTCGCGGCCTTGAGGTTGAAATAAGGCTTGCCGTCCT TGGAGACTTCCTTGGCGTAGCGGGCCTCGTTGGGACTGTTGGTCTGCACCGAAGCGATGCCGTTTTCGGCGGCGCTGCGGGAGGAATACAACTCACTCGT CAAAATGGTTTCAGCATTGCCAGCCTTGAGAACGAAGCGGAACTGCCCGTCACTGCTTTTGCTTAATTCATACCATCCAGCCATGGTCCTGCTCCTGAGT GTCCAAAGATGCGAATGCACTTCGGATTAAAGCCTGTCTTTGCCGGTTTACCAGCGTTTTGGGGTGTGTTGCTGAGGCACGCAGCATCAGACAGGAAAAA CCGCATCCGGTTCATGACGCGAAACTCATGCAGACAAATAGTAATAATTCTCGATATCATTCGCGACCTTTCTGCCCGGCAGCCCTTGCGAAGGATTTTC
DNA Sequence for Gene
>PCHL3084_RS07485
ATGTCTCGCTTCAAGCCCGACCCCACCTCGGCGGACCCCGTCCGCGGGTTCTATGCGGACATCCTGCATTACCTGCGTAAACGCACGGACAACGCCAGCG ATGCGGCGGACATGACCCAGGACGTCTTCACCCAATGGCTCGACTACCGCGACCGGGCCAAGGTCGAACAACCCCGCGCCTTTCTGTTCCAGATGGCGCG CAACCTGCTGCGCGATCACTGGCGCCGGCAGAAGGTCAGGCACAAGGTGCACCACGAACCGCATGCAGCAGAACCCGAGCCACTGGCCGATGAACATCAC GAGCCACTGCCCGCGGCCCAGCGCCTGCAACGCCTGGAGCGCTTGAAGAGCGTGCTCGCCGAACTCTCGCCGCGCCGCCGCGAAGCCCTTATGCTGCACC GCTTCGAAGGCCTGAGCCAGGCGCAGATCGCCGAACGCATGGGCATCTCCCTGAGCATGGTGGAAAAACACATCGCCTTTGCCCTGCTGCACTGCAAGCA GCGCCTGGAACAGGAACACGGCAAGGAGCAAGCCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCGCCCCCGCGACCCTCAACATGAACACGAGCACCCGATCGACAGCATCGATGCCCAGGCGGCCGGCTGGTTCACCCGCAATCGCGACGATCGCAGCCA GGCCACCCGCGACGCCTTCAAGATCTGGTCCAGCGAACCGGCCCATGCCCGGGCCTACGCCGAGTTCGAGCGCTTGTGGGCCGACCTGGCCGAACTCGAA CCACTGAACCGACCGACGCCGCTGCCAGTGCGCAAAAAGCCGCGCTGGCGCCCGGCCCTGGCGGTGGCCGCCGCGTTGGTCTGCGCGCTGCTGGCCATCG AGCTGGGCGCCCCGCCGGCGATCCATTCGCAACGGATCGCCGCGCAGAGCACGGGTATGCGCAGCTTCAACCTGCCCGATGGCAGCACCCTGTACGTCAA CGCCAACACTCGCCTGCGCATCGACTTCACCGCGCAGCAGCGCAACCTCTACCTGGACCAGGGCCAGCTGTACCTGGAAGCCGCCGCCGACAAGGAACGG
Amino Acid Sequence
>RNA polymerase sigma factor
MSRFKPDPTSADPVRGFYADILHYLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRRQKVRHKVHHEPHAAEPEPLADEHH EPLPAAQRLQRLERLKSVLAELSPRRREALMLHRFEGLSQAQIAERMGISLSMVEKHIAFALLHCKQRLEQEHGKEQAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site