Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS07230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 262 | 282 | - |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 462 | 724 | 7.3E-96 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 134 | 182 | 3.0E-14 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 285 | 453 | 8.1E-45 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 470 | 708 | 1.1993E-107 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 462 | 718 | 1.7E-89 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 467 | 702 | 2.7E-75 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 731 | 762 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 295 | 452 | 3.73E-48 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 274 | 452 | 2.4E-55 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 73 | 125 | 3.8E-16 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 279 | 451 | 1.2E-63 |
| Coils | Coil | Coil | - | - | 558 | 578 | - |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 291 | 449 | 6.34975E-61 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 290 | 446 | 1.7E-48 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 461 | 708 | 3.3E-105 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 250 | 710 | 0.0 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 286 | 449 | 6.4E-46 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 202 | 252 | 3.8E-6 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 466 | 713 | 6.8E-85 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.