Sequence View: rimO, Pseudomonas chlororaphis subsp. aureofaciens 30-84

Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS06940 (rimO)

Cytoplasmic

Cytoplasmic Membrane

Periplasmic

Outer Membrane

Extracellular

Unknown

Sequence Data

Strain	Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene	CGTCGTGGTTGACCGGAACCCCGTAATGCCCCGCGAATACCTCCTTCAAGGTATAAAGCGGGCTGGTCCCGATGTCGCCATAAACCACCCCGACCGCCGC CACCAGCATCCCCAGGGGCCTGGCCCTGGAATGCTCGCCGCCTACCGCCTGACTACTTGCCTGACCCATCCACCACTCCTACTACCCAGATCGGGGCTTC TTATAAAAGGCATGACATTCAAGACAACGCCAAGCTTGCAAGACTCTCGTGAATGCCAATGCAGCATGCGCCCTTTTACTTACAGTTACAGACGTTCTGT TGACTATAAGAATTCACCTGGGCGCAACGGCGCGAAGCATAGCGCAGCACTCGTCGTATTTCCCTGCATAAAGCTGGTCAAGTGCGTCGGCCATCGCTAG AATTGCGCACTTTTTGATCAGAGGCGCCCCTAGCGCCCGTTCGTCGCCAGCGGTTTTATCCAGATCGCCGAGCGGCCCGACACCTATACCGAGGTTAGAC BLASTN Search
DNA Sequence for Gene	>PCHL3084_RS06940 \|rimO ATGTCCACCCCTACCGCGCCAGCCAACCCCAAGGTCGGCTTCGTTTCCCTGGGTTGCCCGAAAGCGCTCGTCGATTCCGAGCGCATCCTCACGCAACTGC GTATGGAAGGTTATGACGTGGTGTCCACCTACCAGGACGCCGACGTCGTGGTGGTCAACACCTGCGGTTTCATCGACTCGGCCAAGGCCGAATCCCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAAGGCAATATCCGCGACGTGCATCCGAGCGTGCTG GCCGTGACCGGCCCGCAGCAGTACGAGCAAGTGGTCAGCGCGGTGCACGAAGTGGTGCCGCCGAAACAGGACCACAACCCGCTGATCGACCTGGTGCCGC CACAAGGCATCAAGCTGACTCCGCGCCACTACGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTCAGCCGCCCGGTGGGCGATGTACTGGACGAGGCCCAGCGCCTGGTCAAGGCCGGGGTCAAGGAACTGCTGGTGATCTCCCAGGACACCAGC GCCTATGGCGTCGACGTCAAGTACCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAGCTGTGCGAAGCCCTCAGCACCCTGGGCG TCTGGGTCCGCCTGCACTACGTCTACCCGTACCCGCACGTCGACGAGCTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTGCTCAAGGCCATGAAACGCCCGGCCTTCGAAGACAAGACCCTGGCCCGGATCAAGAACTGGCGCCAGATCTGCCCCGAG CTGATCATTCGCTCGACCTTCATCGTCGGCTTCCCCGGCGAAACCGAAGAAGACTTCCAATACCTGCTCGACTGGCTGACCGAAGCCCAGCTCGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTGGAAGGCGCGCCGGCCAACGACCTGGACCTGGAAGTGGTCCCGGACGAGGTCAAGCAGGACCGCTGGGAACGCTT CATGGCGCACCAGCAGGCCATCAGCTCGGCGCGCCTGCAACAGCGCATCGGCAAGGAAATCGAAGTGCTGATCGATGAAGTCGACGAACAGGGCGCCGTG GGCCGCTGCTTCTTCGACGCCCCGGAAATCGACGGCAACGTATTCATCGACGGTGCCGGCGACCTGAAGCCAGGCGACAAGGTCTGGTGTCGGGTAACCG ACGCCGACGAATACGACCTGTGGGCCGAAGTCCTGTAA BLASTN Search \| DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene	GGCGTAAAAAACCGCAAAGCCCCGCTCTCTTCGCGAGATGCGGGGCTTTTTTAGGTCTATCGTTTGCTCAGGACCACGGATGCGTCACCACACAGGAGCA GGCGGCATGCGCCATCATTCGGTCATCCACACCCCGAAACACAGCGACTACCCGGAACTGACCCGGGTCTGGGAGGCCTCGGTGCGCGCCACCCACGACT TCCTGCCGGACAGCTACATCGAACTGCTGAGAAACCTGGTGCTAAACCGCTATCTGGATGCGGTGATGCTGATCTGCACCCGGGACCAGCACCAACACAT CACCGGCTTCGCCGGGGTCGCCGCCGGCAAGATCGAGATGCTCTTCATCGATCCCGCCCATCGCGGCCAGGGCCTGGGCAAGCAATTGCTCAGGTACGCC ATCGAACACCTGAACGCCGACGAACTCGACGTCAACGAGCAGAACCCGCAAGCCCTGGGCTTCTACTTCAAGCAGGGCTTCGAGGTCATCGGTCGCTCCG BLASTN
Amino Acid Sequence	>ribosomal protein S12 methylthiotransferase MSTPTAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVL AVTGPQQYEQVVSAVHEVVPPKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKAGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWRQICPE LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLDLEVVPDEVKQDRWERFMAHQQAISSARLQQRIGKEIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIDGAGDLKPGDKVWCRVTDADEYDLWAEVL BLASTP \| DIAMOND BLASTP (DIAMOND is faster than BLASTP) Search for conserved domains in this protein at NCBI CDD site