Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS00070 (tssC2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCATCAACGTCACCTTCAAACCCGCCACCGGCGGTGCTCAGGAAGAGATTGAACTGCCGTTGAAGCTACTGGCAATCGGTGATTACACCCAGCGCGTGG ACGAGCGCAAAGTGGAAGACCGCAAGCCGATCAGCATCGACAAAATGACGTTCGACGAAGTGCTGGCCAAGCAGGAGCTGAGCCTGACGCTGAGCGTGCC TAACCGTCTTCAGGAAGAGGGCGACACCGAAGAGCTGGCGGTCAAGCTGCGCGTCAACTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGTG CCTGAGCTGAAAAAACTGATGGAACTGCGCGACGCGCTGGTGGCCCTCAAGGGTCCGCTGGGTAACGCCCCTGCATTCCGTAAAGCCATCGAAGGCGTAC TCGCCGACGACGAATCGCGCGGTCGTGTACTCGGTGAGCTGGGCCTGAACGCCGCAGCCACCGAAGCCTGAGTCTCTATCAGTCAAGGAAGCCAAACACT
DNA Sequence for Gene
>PCHL3084_RS00070 |tssC2
ATGAGCACTAGTGCAGCACAACAGAAAAGCAACGAGAACGGCGAGTACAGCATTCTCGACAGCATCATCGCCGAAACCCGCCTGACTCCGGACGACGAAG CCTACGACATCGCCAAGCGCGGCGTGTCGGCCTTCATCGAAGAGCTGCTCAAGCCTCAGAACAATGGCGAGCCAGTCAAGAAGGCCATGGTTGACCGCAT GATCGCCGAGATCGATGCCAAGCTCAGCCGCCAGATGGACGAAATCCTCCACCACGAAGACTTCCAGTCCCTGGAATCGGCCTGGCGTGGCCTGCAGTTG CTGGTCGACCGCACCAACTTCCGCGAAAACATCAAGATCGAAATCCTCAACGTCTCCAAGCAGGACCTGCTGGACGACTTCGAAGATTCGCCGGAAGTGA TGCAGTCTGGCCTGTACAAGCACATCTACACCGCTGAATACGGCCAGTTCGGTGGCCAGCCGGTGGGCGCGATCATCGCCAACTACTTCATGTCGCCAAG CTCGCCAGACGTGAAGCTGATGCAGTACGTGTCCAGCGTTGCCTGCATGTCCCACGCGCCGTTCATCGCCGCGGCCGGTCCGAAATTCTTCGGCCTGGAA AGTTTCACCGGCCTGCCGGACCTGAAGGATCTGAAGGATCACTTCGAAGGCCCGCAATTCGCCAAATGGCAGAGCTTCCGCCAGTCGGAAGACTCGCGCT ACATCGGCCTGACCGTACCGCGCTTCCTGCTGCGCAACCCGTACGATCCGGAAGAGAACCCGGTCAAATCCTTCGTCTACAAGGAAACCGTTGCCAACAG CCACGAGCACTACCTGTGGGGCAACACCGCGTATGCGTTCGGTACCAAGCTGACCGACAGCTTCGCCAAGTTCCGCTGGTGCCCGAACATCATCGGCCCG CAGAGCGGTGGTGCGGTAGAAGACCTGCCGTTGCACCACTTCGAAAGCATGGGCGAGATCGAAACCAAGATCCCGACCGAGGTACTGGTCAGCGACCGTC GTGAATACGAACTGGCCGAGGAAGGTTTCATCTCCCTGACCATGCGCAAAGGCAGCGACAACGCGGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAA GTTCTTCGGCATCAGCGCCGAAGGCAAGGCCGCGGAGCTGAACTACAAGCTCGGCACCCAGCTGCCGTACATGATGATCGTCAACCGCCTGGCTCACTAC CTCAAAGTGCTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAGCGTACCGACCTCGAGCTGGAACTCAACAAGTGGATCCGTCAGTACGTCGCCGACCAGG AAAACCCGAGCGCCGAAGTCCGTGGCCGTCGTCCGCTGCGCGCCGCGCAGATCATCGTCAGCGATGTGGAAGGTGAGCCGGGCTGGTACCGCGTCAGCCT GAACGTGCGCCCGCACTTCAAGTACATGGGTGCCGATTTCACCCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCAGGAGCTAGGTCATGACCGGATACGGCAGCCTTTTCGAACGCCTGAGTGGCGAGGCCGACAAACGTGTCGGCTGGAGCCGCGAGGTTTCCGCCATGGC GTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGTGCGGGCAGCGTGCAGACGCTGTCCGATTACGGGTTGCCCGATCTCAACGACATGCGCCTG AGCCTGCACGACGCGCTGAGCCAGGCCCGCCTGGCCATCGAAAGCTTCATCGAAGCCTACGAACCGCGTCTGAGCAACGTGCGTGTCGTTTCCCTGCCGC GTGATCACGACCAGCTCAAGCTGGCTTTCAATATCGAAGGCCTGCTTGAGGTGGACGGGTTCAAGCGCCAGGTCAGTTTTTCCGCGCGCCTGGATGGCAG CGGCCAGGTCAAGGTCAGTTAAGGAGACGAGGATGTCAGGTAAACCCGCAGCACGCGTCAGCGACCCCACCGCCTGCCCGCTCCCCGGCCACGCAACCAA
Amino Acid Sequence
>type VI secretion protein
MSTSAAQQKSNENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVKKAMVDRMIAEIDAKLSRQMDEILHHEDFQSLESAWRGLQL LVDRTNFRENIKIEILNVSKQDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVPRFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site