Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS00035 (tssG2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTGCACCAATCAGAACCTGCCGCGCAAGCTCAAGCTCGGCGATATCTGCATGGCCTGTGAAGAGACGCCGGAGTTTTTGAGTTTCCGCAATATCACCC CGGCCACCTCGAGCTACGCGCCACCGCTGAATCGCGACTTCCTGTGGAAGCTGATCAGCAACATGTCGCTCAACTATCTGTCACTGGCCAACGTCGATGC GCTCAAGGTGATTCTCGAAACCTACGACTTGCCGCGTTACTACGACCAGCACCTGGAAAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGTCGATCCGC CATGAGCATGTCGACCGGCTGCATCGGGGCCTGCCGCTGCGCGGTCTGCGCACCGAGCTGACTATCGATCCGGAAGGCTATATCGGTGAAGGCGACATGT TCGTCTTCGCCTCGGTTCTCAACGAGTTTTTCGCTCTTTACGCCAGTCTCAACTCGTACCACGAGCTGCGGGTAAAAAGTACACAGGGAGAGGTGTACCA
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| DNA Sequence for Gene |
>PCHL3084_RS00035
|tssG2
ATGGACACCACGTATGGGTCTACAGCCCCTGCTTTAAGCGGGCTGACCCGGGTCATTCGCGAGTACTCGCTGTTTCAGGCCGTGCTGCTGGTGGTGGACC GGCTGCGCGATTCCCATCCGGGCCTGAGCGAAGAGGATCTCTACGACCAGCTGGAATTCCAGGCCAATCCGAGCCTGGGGTTCCCTGGCAGCGATGTCGA TCGCGTGGAGTTTTTCGAAGAGCACGGGCAAATGCGCGCGCGCCTGCGGTTCAACCTGATCGGGCTGTTCGGCTCCGGCTCGCCGCTGCCGGCGTTCTAC GGTGAACAAGCCCTGGGCGACAGCGAAGACGGCAACCCGACCCGCAACTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGC GCAAGTACCGTTACCGCGCCAGCTTCAAGAGCGGCGCGCTCGACCCGTTTTCCGCCCAGCTGTTCGCCCTGATCGGCCTCGGCGGCGAGGACATCCGCAA GGCCAAGGAGCTGAACTGGAAGCGCCTGCTACCGTACCTCGGCCTGCTCAGCCTGCGGGCCCACTCGGCGGCATTGATCGAGGCCGTGCTGCGTTACTAC TTCAAGCATGCGGACCTGGTGATCGAGCAGTGCATCGAGCGTCGGGTGGAAATTCTCGAAGAGCAGCGCAACCGCCTGGGCCGCGCCAACAGCCAGCTCG GCGAGGACCTGGTGCTGGGCGAACGGGTGCGCGATCGCAGTGGCAAGTTCCGCATCCATATCCGCCAGCTCGACTGGCAACGCTTCCACGAATTCCTGCC GATCGGTTTCGGCTACCAGCCGCTGTGCGCGCTGGTGCGGTTCACCTTGCGTGACCCGCTGGACTACGACATTCGCCTGGTCCTGCGCCAGGAAGAAATC CGCGAACTGCGCATCGGTGAGCAGAACGCCTGTCGCCTGGGGTGGACCAGTTGGCTCGGCCGCGAACGCGCGGACGGCGTGGTGACCCTGGGCAGCAAAA TTCATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACAGATGACATGATCAACGTAGACCTGCAGCAACTGATCCAGGCGCTGGACGCCGAAACCCGCCGTGACCTGGAAAGCTCCGCCGAACGCTGCGTCGC CCGTGGCGGCAGCAAGATCCTGGTCGAAGACCTGCTGCTGGGCTTGCTGGAGCGTCCGCAAGGCTTGCTCGCACGCGCGTTGCAGGACGCCGAAGTGGAT GCCGGCGAGCTGAGCGCGGCGCTGCAATCGCGGGTCGAGCACAGTGCCTCGCGCAACCCGGTGTTCGCCCCGGAGCTGGTGCAGTGGCTGCAGGACGCCT TGCTGGTGGCCAACCTCGAACTGGGCCAGAGCCAGGTCGAGCAGGCGGCGCTGATCCTCGCGCTGCTGCGCAACCCGATGCGTTACGCCGGTAGCCGCTA CCAGCCATTGCTGGCCAAGTTGAACATCGAGCGCCTGAAAGATTTCGCCCTGTCGCAGAAGGAAGAGCCGGCCAGCGGCAAGCCGGCGGCGCCGGGCGAA
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| Amino Acid Sequence |
>type VI secretion protein
MDTTYGSTAPALSGLTRVIREYSLFQAVLLVVDRLRDSHPGLSEEDLYDQLEFQANPSLGFPGSDVDRVEFFEEHGQMRARLRFNLIGLFGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWRKYRYRASFKSGALDPFSAQLFALIGLGGEDIRKAKELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHADLVIEQCIERRVEILEEQRNRLGRANSQLGEDLVLGERVRDRSGKFRIHIRQLDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI RELRIGEQNACRLGWTSWLGRERADGVVTLGSKIH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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