Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS00020 (tagU)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGACATCCTCGACCTGGCCCGGCACTTCGCCGAAAAGGCCTGCGCCTTCCTCCAGCGCGACCCGGTGAGCTGGTCGGAAACCGCCCTCAATCACCTCT CGGGCTACACCTTCCCGGGCAACGTGCGCGAGCTCAAGGGCCTGGTGGAGCGGGCGGTGCTGCTGTGCGAAGGCGGCGAGCTGCTGGCCGAGCATTTCTC CCTGAGCATCGAAGCGTTGCCGGAGGAACCCGGGCTGAACCTGCGCGAGCGCCTGGAGAAGGTCGAGCGTCATCTGCTGCTCGATTGCCTGCGCAAGAAC GACGGCAACCAGACCCTCGCGGCCCGCGAGCTGGGGTTGCCCAGGCGCACGCTGCTGTACCGCCTCGGGCGGTTGAACATCAATCTTGGCGACTTCGAGG GCTAGCGCGACATGACTGCCCCAAGCGCCTTTTTCGTTTCGCCAGGCGTCGCCCGCAAGGGTCGGCGCTTTGTGCATTGTCTACCCATGGAGACCCTCTG
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| DNA Sequence for Gene |
>PCHL3084_RS00020
|tagU
ATGTCTGTTCGTCACTGGCAAGCCGCCCTGCTGGCTCTGATCGTTCTCAGCGGCCTCGGCGGCTGTAGCGGTAATTACAAATTCAACGACAACACCTATC GCCCATTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCAAGGAGCATCATCATGGAACTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCCACGGAGTTGAGCAGCAAAACCTTCAAGCAGGCCGGCGG AGTGATCGGGCGGGGCGAGGATTGCGACTGGATCATTCCGGACCGCAAGCGCCACCTGTCCAACCACCATGCGATCGTCAGCTACCGCGACGGGATGTTT TTCCTCACCGATACCAGCAGCAACGGTATCCAGGCCAGCGACAGCGGCGCGCGCCTGCGCAAGGGCGAGCCGCAGCGTATCGAGCACGGCAGCGTCTATG TGCTGGGGGACTTCGAGATCCGTGCGCGCCTGGTGCGCGATCCGGCGACCTTCGACGCCGAGGTCGGGCGTCCGCAGGCCGCCGGCAGCATCATTCCCGA TGACGCCTTCCTCGACCTCGACCCGCTCAACGCGCTGGACCAGCAGGAGCGGGTGTATTCGGAAATCGACGAGCTGACCGCGCTCAACACGCCGCGCCAG
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| Amino Acid Sequence |
>type VI secretion protein
MSVRHWQAALLALIVLSGLGGCSGNYKFNDNTYRPLGDPQAVNRGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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