Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS00015 (fha2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGCTGTGCGAAGGCGGCGAGCTGCTGGCCGAGCATTTCTCCCTGAGCATCGAAGCGTTGCCGGAGGAACCCGGGCTGAACCTGCGCGAGCGCCTGGAG AAGGTCGAGCGTCATCTGCTGCTCGATTGCCTGCGCAAGAACGACGGCAACCAGACCCTCGCGGCCCGCGAGCTGGGGTTGCCCAGGCGCACGCTGCTGT ACCGCCTCGGGCGGTTGAACATCAATCTTGGCGACTTCGAGGGCTAGCGCGACATGACTGCCCCAAGCGCCTTTTTCGTTTCGCCAGGCGTCGCCCGCAA GGGTCGGCGCTTTGTGCATTGTCTACCCATGGAGACCCTCTGATGTCTGTTCGTCACTGGCAAGCCGCCCTGCTGGCTCTGATCGTTCTCAGCGGCCTCG GCGGCTGTAGCGGTAATTACAAATTCAACGACAACACCTATCGCCCATTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGACCGCAAGGAGCATCATC
|
|
| DNA Sequence for Gene |
>PCHL3084_RS00015
|fha2
ATGGAACTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCCACGGAGTTGAGCAGCAAAACCTTCAAGCAGGCCGGCGGAGTGATCGGGCGGGGCG AGGATTGCGACTGGATCATTCCGGACCGCAAGCGCCACCTGTCCAACCACCATGCGATCGTCAGCTACCGCGACGGGATGTTTTTCCTCACCGATACCAG CAGCAACGGTATCCAGGCCAGCGACAGCGGCGCGCGCCTGCGCAAGGGCGAGCCGCAGCGTATCGAGCACGGCAGCGTCTATGTGCTGGGGGACTTCGAG ATCCGTGCGCGCCTGGTGCGCGATCCGGCGACCTTCGACGCCGAGGTCGGGCGTCCGCAGGCCGCCGGCAGCATCATTCCCGATGACGCCTTCCTCGACC TCGACCCGCTCAACGCGCTGGACCAGCAGGAGCGGGTGTATTCGGAAATCGACGAGCTGACCGCGCTCAACACGCCGCGCCAGGAACCACGCCAGCGCGC GGACTATGCGCGCATCGACATGGAAAGCCTGCTGGTGCCGGAACTGGTGGCACAGCCCGAGGCGCCGGTCGCTGTCGAGCCGGCCCCGGTGGAACGCCAG AGCGAAGGTTTCTGGGAGCATTTCGGCGCGGCGCTGGGGGTGGACCTCAAAGGCCTCGATCACGACGCCCGCGAAGCCCTGGCGATCGATGCCGCGCGCC TGCTCAAGCAAAGCATCGGCGGCCTGCAGCAGAGCCTGCGCACCCGCAGCGAGCTGAAAAACGAACTGCGCCTGGCCCTGACCACCGCCCAGGGCGGCAG CAAGAACCCACTCAAATTCGCCGTGGACGCCAGCGAAGCGCTGGGCATCCTGCTGCAAGGCAACAAGCCTGGCCAGCTGCCGGCCGAGCAGGCGATCTCC CGCGCCTTCCGCGATCTGCAGGCGCACCAGGTGGCGCTGCTGACCGCCAGCCGCGCGGCCGTGCGCGGCACCCTCGAGCATTTCTCGCCGCAGCAGCTGA CCCTGCGTTTCGAGCGCGACAACAAGCCGTTGCTGGCCACCTCCGGCAGCCGCTGGAGAGCCTACAACCGCTATCACCAGGCCCTGCGTCAGGACGATGA CTGGAGCGAACGCCTGCTGGCCCGTGACTTCGCCCAGGCCTACGAAGAACAGATCCGCCTGATCTCCACCCTTCACACCGAACACCAAGGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCGCATGTCTCGCTGCTCGACCCTGTTACTCAAGACGCTGGCCATGCTGACCGCCCTGGCGTTGCTGGCCGGCTGCTCGTCGCTGTCGCCGTACTCGA
|
|
| Amino Acid Sequence |
>signal peptide protein
MELVFEMLNTKQFVPTELSSKTFKQAGGVIGRGEDCDWIIPDRKRHLSNHHAIVSYRDGMFFLTDTSSNGIQASDSGARLRKGEPQRIEHGSVYVLGDFE IRARLVRDPATFDAEVGRPQAAGSIIPDDAFLDLDPLNALDQQERVYSEIDELTALNTPRQEPRQRADYARIDMESLLVPELVAQPEAPVAVEPAPVERQ SEGFWEHFGAALGVDLKGLDHDAREALAIDAARLLKQSIGGLQQSLRTRSELKNELRLALTTAQGGSKNPLKFAVDASEALGILLQGNKPGQLPAEQAIS RAFRDLQAHQVALLTASRAAVRGTLEHFSPQQLTLRFERDNKPLLATSGSRWRAYNRYHQALRQDDDWSERLLARDFAQAYEEQIRLISTLHTEHQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|