Pseudomonas fluorescens SS101, PflSS101_5357 (clpV1)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00004	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00004	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd19499	RecA-like_ClpB_Hsp104-like	-	-	578	786	3.62215E-91
Coils	Coil	Coil	-	-	522	542	-
CDD	cd00009	AAA	-	-	211	366	6.23109E-15
Gene3D	G3DSA:1.10.8.60	-	-	-	788	883	2.0E-9
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	565	861	8.18E-63
FunFam	G3DSA:3.40.50.300:FF:000010	Chaperone clpB 1, putative	-	-	180	372	8.8E-83
Coils	Coil	Coil	-	-	442	462	-
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	665	683	4.3E-30
NCBIfam	TIGR03345	JCVI: type VI secretion system ATPase TssH	IPR017729	AAA+ ATPase ClpV1	13	872	0.0
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	374	563	2.1E-49
SUPERFAMILY	SSF81923	Double Clp-N motif	IPR036628	Clp, N-terminal domain superfamily	12	131	2.75E-18
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	228	373	2.4E-10
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	694	712	4.3E-30
PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	-	-	18	862	0.0
Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	IPR019489	Clp ATPase, C-terminal	788	862	2.4E-14
Pfam	PF17871	AAA lid domain	IPR041546	ClpA/ClpB, AAA lid domain	372	464	3.2E-28
FunFam	G3DSA:3.40.50.300:FF:000025	ATP-dependent Clp protease subunit	-	-	569	786	1.4E-78
Gene3D	G3DSA:1.10.1780.10	-	IPR036628	Clp, N-terminal domain superfamily	1	161	1.5E-40
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	181	372	1.7E-71
Pfam	PF07724	AAA domain (Cdc48 subfamily)	IPR003959	ATPase, AAA-type, core	615	781	1.7E-38
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	189	513	1.08E-70
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	727	741	4.3E-30
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	616	775	2.9E-8
SMART	SM01086	ClpB_D2_small_2	IPR019489	Clp ATPase, C-terminal	788	880	3.2E-13
Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	IPR004176	Clp, repeat (R) domain	28	75	0.061
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	620	638	4.3E-30
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	IPR003959	ATPase, AAA-type, core	233	366	5.0E-9
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	569	786	2.1E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.