Pseudomonas fluorescens SS101, PflSS101_5355 (tssF1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCTTCCCGCGACCGTCTGCAACCGTCCCTGCTGGACCGGTTGACCGACGACGACCCGACCAACCCCAAGGAAAGCGCCGACAAACGCGTGCTGTCCC TGACCCAATTGAAGGCCTCGGTGCTGCGTGACCTGGCGTGGTTGCTTAACACCACCTCGTTACTCGATACCGATGCCACGCTGCACACCCCGGCCGGTAC GTCGGTGGTCAATTACGGCCTGCCGGCACTGGCGGGCAACAGCGCTTCGAGCGTTGATATCAAAGCCCTGGAAGCCTTGATTTACCAGGCTATCGCCACT TTCGAGCCGCGTATTTTGCGCCACACATTGCGGGTCAAGGCGCGCATGGGCCATGGCGAGATGAATCACAACGCCCTGAGTTTCGAAATTGAAGGCGACC TGTGGGCACAGCCGGTGCCGTTGCGTTTGCTGTTGCAGACCGACGTGGACCTGGAGTCCGGCCATGTGCGCGTGCTCAATGCCGACCAGCGGAGACGCCC
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| DNA Sequence for Gene |
>PflSS101_5355
|tssF1
ATGAACCCGCGCCTGCTGGAGCTGTACAACCAGGAATTGCACCATGTGCGCGAAAGCGCCGCCGAGTTCGCCAAGGAATACCCGAAGATCGCCAGTCGGC TGACCCTGTCCGGTATGGACTGCGCCGACCCGTACGTCGAACGTTTGCTTGAAGGCTTCGCCTATCTCACCGCCCGTGTGCAGCTCAAGCTCGACGCCGA GTACCCGACCTTCACCCACAACTTGCTGGAAATCGCCTACCCGCACTACCTGGCACCGACGCCGTCGATGACCGTAGTGCAACTGCAGACCGACCCCGAT GAAGGCTCCCTGGCCGGCGGTTTCCCGCTACCCCGTGACACCGTGCTGCGTGCCGCCCTGGGCCGTGAAACCCAGACCTGCTGCGAGTACCGCACCGCGC ACCCGGTGACGCTGTGGCCGTTGCAGGTCAGCAACGCCGAGTACTTCGGCAACCCCGCCGCCGTGCTCGGGCGCCTGGCCGCCAGCGAACCGAAAGCCAA GGCCGGCCTGCGCCTGACCCTGCGCACCGGTGCCGAGCTGCCGTTCAACAGCCTCGATTTGGACACCTTGCCGCTGTACCTGAGCGGCGCCGATGAACAA CCGTTTCGCCTCTACGAACAACTGCTGGGCAATGCCTGCGCGGTGTTTGCGCGCCAGCCCGGTGGCGATTGGGTCGAGCGCCTGCCCCAGGGCGCGTTGC GCTCGCGGGGGTTCGATGATGCCGATGCGGCCATGCCGGTGGTGGCGCGGGCGTTCCAGGGCTATCGCCTGTTGCAGGAATACTTTGCCCTGCCCCATCG CTTCCTGTTCGTTGAGTTCGCCGAGTTGAGCCGTGCAGTCAAACGGTGTGACGGCCAGGAGCTGGAACTGATCGTGCTGTTCGACCGCCACGAACCGAGC CTGGAAGGCAGCGTCGGCGCGGCGCAGTTCTTGCCGTTCTGCACGCCCGCCATCAACCTGTTCCCCAAGCGCGTGGACCGCATCCACTTGTCCGACCGGG TCAATGAACACCACGTGATCGCCGACCGTACGCGGCCGATGGATTTCGAGATTCACTCGTTGAGCGGCATCACCGGCCATGGCACCGGGCCGGAGCAGCC GTTCTTGCCGTTCTATGCGGTGCGCGATCCGTCGCGCTATGGCCGCGACCAGGCCTATTACAGCGTGCGCCGCGAGCCGCGGGTGCTGTCCAGCGATCAG CGCCGCAATGGCCCACGCTCCACTTATGTGGGCAGTGAAACCTTCGTCAGCTTGGTGGACAGCCGCCAGGCGCCGTATCGCCATGACCTGCGCCAACTGG GCGTGACGGCGCTGTGTACCAACCGCGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCAAGACCGACTTCACCCTGGCCGATAGTGCGCCGGTGCTGGC CGTGCGGTGCGTCGCCGGGCCAAGCCGCCCGCGTGCCAGCCATGCGCATGACGCCAAGGCCTGGCGCCTGATCAGCCAGTTGTCGCTCAACTACCTGTCC TTGAGCGAACAGGGCCAGGGCGCCGGCGCCTTGCGCGAACTGCTGCGCCTGTACGGCGACAGCAATGACGCCGCCCTGCAATTGCAGATCGAGGGCTTGC GCGAAGTCAGCAGTAAGGCGGTGACCCGACGCCTGCCGATGCCCGGCCCGATTGTGTTTGGCCGCGGCCTGGAAATCACCTTGGAGTTCGATGAAAACGC GTTTCGCGGCACCGGCGTGTTCCTGCTCGGTGCCGTGCTGGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGATCCGTACC ACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCGGACGGCGTCCGACCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACCCTGGACGCGATGCACCAGGAGCCCTGGGAATATGACTTTTTCCAGGCATTGCGGCGCATCGAGTGCGAAACGCCCGAGCTGCCACGCCTGGGCCA TTCCCTGCGCCTGGCCGATGATCCGCTGCGCCTGGGGCAGCAGGCCGATTGCACCTTCGCACCCGCCACCCTTGCCTCGGTCGAGCCAGGAGGCGATGGC AAGCCGGCGCGGTTGGAGCAGTTCTTCTTCGGCCTCGGCGGCCCCAACGGCCCGCTGCCGCTGCACATCACCGAGTACGTGCGCGAGCGCCAGCGCAACA ACGCCGACAGCACCAGCAAGCAGTTCTTGGATGTATTCCACCATCGCCTGCTGACCCTGTTCTATCGGGCCTGGGCCGAGGCGCGGCCAACGGTCAGCCA TGACCGCCCGGACGATGACTACTGGTCCGCCCGCCTCGCCGCCCTGAGTGGCCGCGGGATGCCGAGCCTGCTCAATCAAGGGCTGATCCCCGATACCGCG
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| Amino Acid Sequence |
>type VI secretion system protein ImpG
MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPD EGSLAGGFPLPRDTVLRAALGRETQTCCEYRTAHPVTLWPLQVSNAEYFGNPAAVLGRLAASEPKAKAGLRLTLRTGAELPFNSLDLDTLPLYLSGADEQ PFRLYEQLLGNACAVFARQPGGDWVERLPQGALRSRGFDDADAAMPVVARAFQGYRLLQEYFALPHRFLFVEFAELSRAVKRCDGQELELIVLFDRHEPS LEGSVGAAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHSLSGITGHGTGPEQPFLPFYAVRDPSRYGRDQAYYSVRREPRVLSSDQ RRNGPRSTYVGSETFVSLVDSRQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVLAVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLS LSEQGQGAGALRELLRLYGDSNDAALQLQIEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVLERFLARYVSINSFTETVIRT TERGEIMRWKAKPGRRPTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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