Pseudomonas fluorescens SS101, PflSS101_5349 (fha1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCCCTTGGCATCACGTTCCAATTGCAGAAATTGCGCGTCATATTCCATGTCCTCGCCACAGGGCGACGTCGCGGAAACGGCGGTGAGCAGCAACGGCA CATCCACTGAATTCGATCTCCTTATCGGCCCGCTGGATGGCGGGCAACGCATGCATTAGTTGCGTAATGAACTTTGCATGTTTTCTTGGTCATATATTCA GCGTGCCACTACTGCGCCATCACTGATGTTCAAGAAGTTGTGCATTTTTGGTGTAGTACTTATGGCTTGTCAAGGTAAGCTATTCGCCCTCTGTGACAGA TGTGCGGTGTTTAACAACCTGCGCGACTGGCGAGTCGAAAGGCGCGCCCAGAGCGGATTTTTGTCATGGAAGCCAGTTAAGATCAGCGATCATGCTGGTA AAAGCAGATTTTGGCGGTCGTTTGTACGACAGGACGGGACTTTCCAGGGCGGCACAGCCTCCTGGGTAGGCTGCGCGCGATGTATCAGCAAGGAGGCAAG
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| DNA Sequence for Gene |
>PflSS101_5349
|fha1
ATGTCGCTGTGTTTGACTATCACTAGTTATCACAAGATCACACCTGGGCAATGCCCCGAAAAGTCCATGGATCAGGGCGTGATGGCTATTGGCCGCAGTT CTGACAATGACTGGGTATTGCCCGACCCTGAGCGTCTCGTCTCTTCGCAACATTGCGTTATTCAATACAAAGATGGCCGTTATTATTTGACCGATAACAG CACCAATGGTGTGGAGTTGGTCAAGGCGGGTATTCGTATGCGTCGGGGTAACAGCGAGCCGTTGCAAGACGGTGAATTGATCCGCATCGGCGATTACGAA ATCCAGGCGCGTATCGACTTCAACGTGCAGGCCATCGACAGCCAGCCATTTGCCGGCGACTCACCCAATAGCTTTGAAGCGCTGATGGGCGCCGTGGCGA GCCAACCTGCGCCCACGCCGATGATCGCGCCGCAGTTCCAGGGCGCCTCGGCCATGGAAACTTTGCCAGACCTGTTCGACTTCCTCAGCCCCACCGCCGT GCCGCCGCCCACCGTGGCGGACCATGTGCCGTCCGAGCAACACGATTTTCGCCCCCCGGCCCCAGTGGCCGTACCGGCGCCCGAAAAGCCATTGGTGCAA GGCTCGGTGATTCCCGAAGACTGGGACCTGTTCGGCGACGCGCCCGCGCCCGTGGTCAATGCTGCGCCCGCCCCAGACCCGATCATCCCGCCGCCACCTG TGGTCGAGCCTGTTGCGCTCCCCGTGGCCAATGCCGAGCCACAACCAGACCTCCTGCAAGCCTTCCTGCGCGGTGCGGGCCTGGAGCAGTTGCGCCTGGA CAGAGCCGACGCCTGCGCGCAGATGGAAAGCATCGGCCGCAGCTACCGGCTGATGGTCGAGGGCCTGATCGACGTACTGCGCGCCCGTGCCAGCCTCAAG GGCGAGTTCCGCATGCAGCAGACTATGATCCGCCCCGCCGAAAACAACCCATTGAAATTCGCCCCGAATGCCGATGAAGCGTTACTGCTGTTGCTGCGTC ATGGCAATCAGGCGTTCATGGCGCCGGACCTTGCCGTACGTGACAGTTTCGACGACCTGCGCGCCCACCAGTTGGCCGTAATGGCTGGCGTGGAAGCGGC GATCAAGCACCTGCTCGCGCGCTTTGAACCGGCGCAATTGGAGGAGCGCATGGGCAAGCCCGGCGGCCTCTCGAGTCTTTTCAACGGTTCGCGCCAGGCC CAGTACTGGCATCAGTTCACCGAGCTCTACAGCAACATTTCCCGCGAGGCTCAGGACGATTTCCAGGACCTGTTCGGTCGCGAATTCAGCCGGGCCTACG AAGAACACAGTGCACGACAGCGAGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACGCCTCGCATTAATGGATAAAACGGATAGCTAAATACGTCATTGAGGACGCAGGATGATTCCCAGGTTTTTACTCGCAGCCGCTACCGCGCTGCTGC TGACGGCGTGTGCCAACGACGCGGTCAAACCCCAGGCGGCTGCCGAGGCCGAAGCCGACACGGCCGCCGTCGAATTGCACTTTCACGCGATTGCTGGGCT TAACCCCGGTGCCAACGGCCAGGCCGCGCCGGTGCGGGTGCGCATTTTCGAATTGAAAAACGCCGCTACCTTTTCACGCTCCGATTACTTCGCCCTGGCG GACCGTGCGCAATCGACCCTCGGCCTCGACCTGCTGGACCAGGACGAAGTGATGGTGCAGCCCGGCCAACAACTGAGCGTGCAGCGCGACCTCGACCCGT CCACGCGCCAGATCGGCCTGCTGGTGGGCTACCGCGAGTTGGACCGTGCGCAATGGCGCACGGTCATCAACGTGCCGCCGCGCCAATACAGCGAATACCA
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| Amino Acid Sequence |
>type VI secretion protein
MSLCLTITSYHKITPGQCPEKSMDQGVMAIGRSSDNDWVLPDPERLVSSQHCVIQYKDGRYYLTDNSTNGVELVKAGIRMRRGNSEPLQDGELIRIGDYE IQARIDFNVQAIDSQPFAGDSPNSFEALMGAVASQPAPTPMIAPQFQGASAMETLPDLFDFLSPTAVPPPTVADHVPSEQHDFRPPAPVAVPAPEKPLVQ GSVIPEDWDLFGDAPAPVVNAAPAPDPIIPPPPVVEPVALPVANAEPQPDLLQAFLRGAGLEQLRLDRADACAQMESIGRSYRLMVEGLIDVLRARASLK GEFRMQQTMIRPAENNPLKFAPNADEALLLLLRHGNQAFMAPDLAVRDSFDDLRAHQLAVMAGVEAAIKHLLARFEPAQLEERMGKPGGLSSLFNGSRQA QYWHQFTELYSNISREAQDDFQDLFGREFSRAYEEHSARQRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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