Pseudomonas fluorescens SS101, PflSS101_4770 (mrdA_1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAATAAGGAACGGCTGTGCGCCTGCGTCTGATCGCTGTCGGTTCACGCATGCCCAAGTGGGTGGAAGAAGGCTGGCACGAATATGCCAAGCGTCTGCC CGCTGAGCTGTCGCTTGAGCTGGTGGAAATACCGCTCAATACCCGGGGCAAGAACGCCGACGTGGCGCGCTTTATCCGTCAGGAAGGCGAAGCCATGCTG GCCAAGGTCGGCCCCAATGAGCGCATCGTCACCCTTGAAGTGCACGGCAAGCCCTGGAGCACCGAGCAACTGGCGGTGGAACTGGATCGCTGGCGCCTGG ATTCGCGCACGGTCAATTTCATGGTCGGCGGCCCGGAAGGGCTGGCGCCGGAAGTCTGTGCGCGGGCCGATCAGCGCTGGTCGCTGTCGGCGCTGACGTT GCCGCACCCGTTGGTAAGGATTCTGATCGGTGAACAGCTGTATCGCGCCTGGACAGTCCTGTCCGGGCACCCTTACCACAAATAGTCTGCGCCGCCCCCG
|
|
| DNA Sequence for Gene |
>PflSS101_4770
|mrdA_1
ATGACCCAACCGATCCGCATCAAGGACCACGAGAAAGACGCACGTCTGGTACGCGCGCGGGTGGTGTTCGGTGCTGTTTTGGTGGTGGTGCTGATGTGCG TGCTGATTGCGCGGCTGTATTTCCTCCAGGTGATCCAGTACGACTATCACTCCACGCTGTCGGAAAACAACCGGGTGCATGTGCAGCCGATTCCCCCGAC CCGTGGGCTGATCTTCGACCGCAATGGCGTGGTGGTTGCCGATAACCGGCCCAGCTTCAGCCTGAGCATGACCCGTGAACGCTCCGGCGATTGGAAGCAG GTCCTTGATGTCATCGTTGAGGTGCTGCAACTGACGCCGGAAGACCGGGTGGTCTTCGAGAAACGCATGCGCCAGGGGCGCCGGCCGTTCGAGCCGGTGC CGATTCTGTTCGAGCTGACCGAAGAGCAGATCGCCCGCATTGCGGTGAACCAGTTCCGCCTGCCAGGTGTGGAAGTGGTGGCGCAGTTGGTGCGGCATTA CCCGCAAGGGCCGCACTTTGCGCACTCCGTTGGCTACATGGGGCGGATCAACGAGAAAGAACTGAAAACCCTCGACCCGATCAACTACAGCGGCACCCAC CATATTGGCAAAACCGGCATCGAGCGCTTCTATGAGGCCGAGTTGCATGGCCAGGTAGGTAACGAGGAAGTCGAGACCAATGCGCGTGGCCGCGTATTGC GCGTGCTCAAGCGCACCGATCCGGTGCCGGGCAAGGACATTGTCCTGAGCCTGGACATCAAGTTGCAGGAAGCTGCCGAGATGGCCCTGGGCGGTCGGCG GGGTGCCGTGGTGGCGCTGGACCCGAAGACTGGCGAAGTGCTGGCGATGGTCAGCCAGCCCAGCTTCGACCCCAACCCGTTTGTGACTGGCATCAGCTTC AAGGCCTACGCCGAGCTGCGTGATTCCATCGACCGGCCACTGTTCAACCGTGTGTTGCGCGGCCTGTACCCACCGGGCTCGACCATCAAGCCGGCGGTGG CGATTGCCGGCCTGGATGCTGGCGTGGTCACGGCCTCAAGCCGGGTGTACGACCCTGGCTATTACATGCTCCCCAACTACGACCACAAGTACCGTAACTG GAACCGCTCCGGTGACGGCTATGTCGACCTGGATACCGCGATCATGCGCTCCAACGACACCTATTTTTACGACCTGGCCCACAAGCTGGGGATTGATCGG CTGTCTGCCTACATGGGCAAGTTCGGCCTCGGTCAGAAAGTCTCCCTGGACATGTTCGAAGAGTCCCCCGGCCTGATGCCGTCGCGGGAGTGGAAGCGTG CGACCCGTCGCCAGGCGTGGTTCCCCGGCGAAACCCTGATCCTCGGTATCGGCCAGGGCTATATGCAGGCCACGCCGCTGCAACTGGCCCAGGCCACGGC GCTGGTGGCGAACAAAGGCGTGTGGAACCGACCGCACCTGGCCAGGACCATCGAAGGCGAAAAGCCGGTGGACGACAATCCGATTCCGGACATCGTGCTG CGTGACCCGTCCGATTGGGCCAAGGTCAACCACGGCATGCAGCAGGTAATGCACGGCGCTCGCGGTACCGCACGCAAGGCGGCAATCGGCGCGCAGTACC GCATTGCCGGCAAGAGTGGTACCGCTCAAGTGGTCGCGATCAAGCAGGGCGAAAAGTATGACCGCTCCAAGGTGCAGGAACGCCACCGCGACCACGCCTT GTTTGTCGGCTTTGCCCCGGCCGAAGACCCGAAAATCGTGGTGGCAGTGATGGTCGAGAACGGCGAGTCCGGCTCCGGCGTCGCGGCCCCAGTGGTACGC CAGGTGATGGACGCCTGGCTGCTGGCCGACGATGGCCGGCTCAAGCCCGAGTATGGCGGCCCCCCTTCAAGCCCCGAGGTTACGGCCCGTGAAGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTTGACCGCATCCTCTCCAGTGAAGATGTGATGCGTCGCCGTGCGACGTTGCTGCAACGCATGCACATTGATGGCCCCTTGCTGATCCTGCTGCTGACC CTGGCGGCCGGCAGCCTGTTCGTGCTGTATTCGGCCAGCGGCAAGAACTGGGACCTGCTGATCAAGCAGGCGTCCTCGTTCGGCCTGGGTTTGCTGTCGA TGGTGGTGATCGCCCAATTGGAGCCGCGCTTCATGGCGCGCTGGGTGCCCTTGGGCTATGTCGCCGGCGTGTTGCTGCTGGTGGTGGTGGACGTCATGGG CCACAACGCCATGGGCGCCACACGCTGGATCAACATCCCCGGGGTGATTCGCTTCCAGCCGTCGGAATTCATGAAGATCCTGATGCCGGCCACCATTGCC TGGTACCTGTCCAAGCGCACCTTGCCGCCGCAGCTCAAGCACGTGGCGATCAGCCTGATCCTGATCGGCGTGCCCTTCGTGCTGATTGTGCGCCAGCCGG
|
|
| Amino Acid Sequence |
>penicillin-binding protein 2
MTQPIRIKDHEKDARLVRARVVFGAVLVVVLMCVLIARLYFLQVIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWKQ VLDVIVEVLQLTPEDRVVFEKRMRQGRRPFEPVPILFELTEEQIARIAVNQFRLPGVEVVAQLVRHYPQGPHFAHSVGYMGRINEKELKTLDPINYSGTH HIGKTGIERFYEAELHGQVGNEEVETNARGRVLRVLKRTDPVPGKDIVLSLDIKLQEAAEMALGGRRGAVVALDPKTGEVLAMVSQPSFDPNPFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDAGVVTASSRVYDPGYYMLPNYDHKYRNWNRSGDGYVDLDTAIMRSNDTYFYDLAHKLGIDR LSAYMGKFGLGQKVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALVANKGVWNRPHLARTIEGEKPVDDNPIPDIVL RDPSDWAKVNHGMQQVMHGARGTARKAAIGAQYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPAEDPKIVVAVMVENGESGSGVAAPVVR QVMDAWLLADDGRLKPEYGGPPSSPEVTAREE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|