Pseudomonas fluorescens SS101, PflSS101_4351
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCAGGCGCAGGTGCCGATCATCATGCTCACCGCCAGTTCCGACGAAGCCGACCGCGTGATCGGCCTGGAGCTGGGCGCCGATGACTATATCGGCAAG CCGTTCAGCCCCCGCGAGTTGCAGGCGCGTATCAAGGCACTGCTGCGCCGCTGCCAATTCGGCCAGGAGCGCAGCAGCGGCGGCGATGTGTGGGTGTTCG ATGAATGGCGCCTGGATATGATCAGCCACCGCTTGTTTCATGTGGATGGTGAAGAGGTAATTCTCTCCGGTGCCGATTTCGCCTTGCTCAAGTTGTTTCT CGACCACCCGCAACAGATCCTCGACCGCGACACCATCGGCAACGCCACCCGTGGCCGCGACCTGATGCCCTTGGACCGTATCGTCGACATGGCCGTCAGC CGCTTGCGCCAGCGCCTGCGCGACACCGAGAAACCTCCGCGGCTGATCCGCACCGTGCGTGGCAGCGGCTATCAACTGGCAGCCAGCGTGGTTGCCGGCA
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| DNA Sequence for Gene |
>PflSS101_4351
ATGCCCACTGAACCGCTGAACGAACGTCGCCGCCGCTTCCCGGTACCCCGCTCGCTGCTGGGGCGCATGTTACTCCTGACCTTGCTGGCGGTGCTGTTCG CCCAAGCGCTGTCCAGCGTGATCTGGGTGTCGCAACTGCGCGCCACCCAGCTTGAGGGCCTGGTCACCAGCGCCCGCAGCTTGGCGCATTCAATGACCGC CAGCGTGAGTTACTTCCGGTCGCTGCCGGTGGCCTATCGCCCGTTGGTGCTGGACCAATTGCGCAGCATGGGCGGCACGCGTTTTGTGGTGACCCTCAAT GATCGCCCGCTGGACATGCAAATACTGCCCGAAACCCCGCGCAAGCAAGCGGTACTGGTGGCGGTGGATGAAGTGCTGCGCCAGACCCTGGGTGCCGACG TGCACATCTCGGTTGAGTTCGTCAGCGCCGAAGACCTGCGCATCTTCAATGCTGGCCTGAAGCTCGACGAACTGCCACGCTCCTGGGCCCATTACGCGCT GACCCTGGAACCGGTGAACCCGCCGGTGCTGGTCACCCAGATCCAATTGGCGCCCGGCGAATGGCTGTACATCGCCTCGCTGTTGCCCGAGCCCTACACC AGCCTGGAAGAGCAAGGCCTGCCGTCCCAGCAGGTGTGGTTTATCGTGCTCACCAGCGGTTTTCTGCTGCTGTTCATCGGCCTGCTGGTGCACTGGCAAA GCCGGCCGCTCAAGCGCCTGGCGCGAGCGGCGCGGGACATGTCCCTGGGCGCCGATGTGGAGCCGGTGGCGGAAGGCGGCGGCAGTGAAGTGGTGGAAGT GGGCCGTGCGTTCAATGCCATGCGTGAACGCATCAGCCGTTACCTGACCGAGCGCAGCCAGTTGTTCAGCGCGATTTCCCATGACCTGCGCACGCCCATC ACCCGCCTGCGCCTGCGCGTGGAATTGCTGGAAGACGAGAACCTGCAAAACAAGTTCGGCCGTGACCTGGATGAACTGGAGTTGCTGGTCAAGGGCGCGC TGCAATGCGTGAAAGACACCGACATCCACGAAAACATCCAGCCGGTGGACCTCAACCACGTCCTCGAATGCCTGGTGGAGCCGTACCTGGCACCCCATGG CAATGGCCGAGTGACCCTCGATGGCACGGCGCTGTCAGCCTACCCAGGCAAGCCGCTGGCGCTCAAGCGTTGCATCGGCAACCTGATCGACAACGCGCTC AAGTACGGGCAGAACGCGCATTTGCATATCGAGGACGATGGCGTGCAGTTCATCCTGCATGTGGACGACGAAGGGCCTGGTGTGCCGCAGCAGCGACTGG AGCAAGTGTTTGAACCGCACTTTCGTCTGGCCGGCCAGCAGCAGGGTTACGGGTTGGGGTTGGGGATTGCGCGCAACATTGCCCACAGCCATGGGGGCGA AGTGAGTTTGCAGAACCTGCGCGAAGGCGGCCTGCGTGTCACCCTGCAACTCCCCCGCGGATTAGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATATACGCAGGACTACTGTGGGAGCTGGCTTGCCTGCGATAGCAGTGGTTCAGTTGACTCATCAGTGACTGACACACCGCCATCGCAGGCAAGCCAGCTC CCACATTTTACTCCGCGTACATCAGATGCTTTGACGCAACCGGGCCAGGTCGCGCAGCGGCGGCGCACCAAACAACCGGCTGTACTCCCGGCTGAACTGC GACGGGCTTTCATACCCCACCCGATACCCCGCCGCCGAAGCCTCCAGCCCTTCGGCGATCATCAGCCGCCGCGCTTCCTGCAAGCGCAGTTGCTTCTGGT ATTGCAGCGGGCTCATAGCGGTGATCGCTTTGAACCGGTGGTGCAAGGTCGAGACGCTCAGGTTCACTTCCTTGGCCAGGTCGTCGATACGCAGCGGCTG TTCGTAGTTGCCATTCAACCAGGTGATTGCCTGGCTCACCCGATGGCTCTGGCTGTTAGCCACAGCAATTTCATACAGGCGATAACCCTGCGGGCCACGC
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| Amino Acid Sequence |
>sensor histidine kinase
MPTEPLNERRRRFPVPRSLLGRMLLLTLLAVLFAQALSSVIWVSQLRATQLEGLVTSARSLAHSMTASVSYFRSLPVAYRPLVLDQLRSMGGTRFVVTLN DRPLDMQILPETPRKQAVLVAVDEVLRQTLGADVHISVEFVSAEDLRIFNAGLKLDELPRSWAHYALTLEPVNPPVLVTQIQLAPGEWLYIASLLPEPYT SLEEQGLPSQQVWFIVLTSGFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVAEGGGSEVVEVGRAFNAMRERISRYLTERSQLFSAISHDLRTPI TRLRLRVELLEDENLQNKFGRDLDELELLVKGALQCVKDTDIHENIQPVDLNHVLECLVEPYLAPHGNGRVTLDGTALSAYPGKPLALKRCIGNLIDNAL KYGQNAHLHIEDDGVQFILHVDDEGPGVPQQRLEQVFEPHFRLAGQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPRGLD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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