Pseudomonas fluorescens SS101, PflSS101_4331 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGATCAGCGATGCCGACCAGCCGATGGGCGTGCCGTCATCCTGTACCACGCGCAGGCCCATGACCTGCTTGCCCGGCGAGCAGCCCTGGTTGAGCACTTC GAACAACACCATGTACCACCAGCTCACCAGGAACAGCAGCAGCGAACCCAGCCCGACCCCCACATTGCCGAGCAACGCCAGTGGCACCAGCAGGATACCC ATGATGATCCCGCGCACGCCCAGGTCGAATGCAAACGCCAATGCCCGGGAGGGCAGGCCAGCAGGGCGCAGGGGCAGGTCGATGCCCTCCGGCGTTTCTA TCTGATAGTGGGTATCCAAAGGCGTTGATGGCATTGCGATCCTTGGCAGTGCGAGGCGACTTAGAAACACGGATGCTAGCAGTGTCGAGGATGGAAGCAA CCACCCGAGGTTTTTCTGGATATTTATACAGTAAGGTATCGCTGGCCCCAAACGCCTTGCAGCGCCTAGACTTTGTCGGTCTTCAGCACAGGAATAGCCC
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| DNA Sequence for Gene |
>PflSS101_4331
|sbcB
GTGACCTCGATTTTCTGGTACGACTATGAAACCACCGGCATCAACCCGCGCAACGATCGTCCGCTCCAGGTAGCCGGTATCCGCACCGACCTTGAGCTCA ATGAGGTCGGTGCGCCGATCAATCTGTATTGCCAGCCCAGCGACGATATCCTGCCTCATCCGGCAGCGTGCGCGATCACGGGTATCACGCCGGGTATCCT CGCCGAGAAGGGCCTTGCCGAAGCCGATTTCATGACTCGGGTGCACGCCGAGCTGGCCGCGCCAGGTACCTGCGGCGCCGGCTACAACACCCTGCGATTT GACGATGAAATGACGCGTTACAGCCTGTACCGCAATTTTTTCGACCCGTATGCGCGCGAGTGGCAGGGCGGCAACAGCCGCTGGGACTTGATCGATGTCA TGCGCACCGCCTACGCCCTGCGGCCGGAGGGCATCAACTGGCCCGAGCAGGAAGGGCGCGTGACCCTCAAGCTCGAACGCTTGACCGAGGCCAACGGCAT CGACCATGGCCAGGCCCATGACGCGTTGTCGGATGTGCGTGCAACCATCGCCCTGGCGCGGTTGGTCCGAGACAAACAACCGAAGTTGTATGAGTGGTTG TTTCAACTGCGCAGCAAACAGCGGGTTATGGATGAGGTGCGGTTGCTGCAACCGATGGTGCATATCTCCGGGCGTTTCTCTGCCGAGCGCCATTACCTGG GCGTGGTCTTGCCCCTGGCCTGGCACCCGCGCAATCGCAATGCCTTGATCGTCTGTGACCTGGGGCTCGATCCACAAGGGCTGTTGGACCTGGATGCGGC GACCCTGCGCCAGCGCCTTTACACGCGCCGCGATGAGTTGGCCGAAGGTGAGCTGCCGGTTCCGCTCAAGTTGCTGCATATCAACCGCTGCCCGGTGGTC GCGCCGTTAAAGGTGCTGCGCCCGCAAGATCTGGAGCGCCTGCAACTGGATAAGGAGGCTTGCCTTGCGCGGGCGCTGCGGCTAACTGACGCACAGGAAG TTTGGCGGGACAAGTTAGCGGCCATTTATGCCGAGGAAGACTTTGCGCCGAACGCGGACCCGGAGCAGCAGCTCTACGATGGTTTTATTGGTGACCGTGA CCGTCGTTTATGTGAGCAAGTTCGCATGGCGGAGCCTGCGCAGTTGGCCCGTCAGCAGTGGCCGTTCGATGATCATCGTTTGCCGGAATTATTATTTCGC TACCGGGCGCGTAACTTTCCTGAAACCTTGAACAATGAGGAGCAACACCGCTGGAAACTTTTCTGTCAGCAACGTTTGTCGGATGCGCAGTGGGGGGCGC CGAATACCCTGTTGGGATTTAAGCAGGCGCGTGAGGAGTTGGCGGTTAGTGCTACATCGTTTCAGTGTCAGGTACTGGCGCAATGGCAGGACTATGTAGA TTCCTTAGCGGCGCGCCTGAATCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCATAACTACAGAATATTCCGACAATAAAAAACGCCAGCAAGCTGGCGTTTTTCATGTGTGACGTATCGGGTGAACGTCCGACCGGGCTTAGCCCAGC AGGGTTGCCCAACCTTCAACTACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTTTTGTGGTTGCCACCTTTGGTTTCAATCACTTCGCCGTTGT GCGGGTTTTTGTACTGCTTGACCTTGCGAGCACGCTTGGTGCCGGTAGTTTTCACAGCGCCACGTGGTGCTTTAACTTTCGACTCTGGATCCAGCAGCGC GATGATGTCACGCAGGGATTTGGAGTATTCACCCATCAGGGTGCGCAATTTGCCTTCGAATTCCAGCTCGGTTTTCAGCTTGTCGTCTTCGGACAGGTTC TTCAAACGGGCTTGCAGCTCTTTGATAGCTACTTCGGTGGCGCGGTATTCGTTGATCAGTGACATGTGGACTACCTTATGTAGAACGCTGATTGACAGGG
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEVGAPINLYCQPSDDILPHPAACAITGITPGILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVMRTAYALRPEGINWPEQEGRVTLKLERLTEANGIDHGQAHDALSDVRATIALARLVRDKQPKLYEWL FQLRSKQRVMDEVRLLQPMVHISGRFSAERHYLGVVLPLAWHPRNRNALIVCDLGLDPQGLLDLDAATLRQRLYTRRDELAEGELPVPLKLLHINRCPVV APLKVLRPQDLERLQLDKEACLARALRLTDAQEVWRDKLAAIYAEEDFAPNADPEQQLYDGFIGDRDRRLCEQVRMAEPAQLARQQWPFDDHRLPELLFR YRARNFPETLNNEEQHRWKLFCQQRLSDAQWGAPNTLLGFKQAREELAVSATSFQCQVLAQWQDYVDSLAARLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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