Pseudomonas fluorescens SS101, PflSS101_3939 (dacB_2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTTTTGAGCCAGGCTTCGACCGCAGCACGCTGCTCTTCGGAGACCGAGCCACGCTTCTGCAGGCAAACCAGACCGTAGTCATCGCCGCCGACATAGCCC AGGCCGTTGGCTTCCATGGCTTCTTTGATGAATGCTTCGAGGAAAGCGTCGATAGCTTCTTCACTCAGGCCTTCGTTGAAGTCCAGGTTCAGTTCGAAAC CCAGCTCTTGAAATTCATCAACGCACAGTTTTTTGCGCAGACGCTGGGAACGGTTAGTCGCCATTGGAACAATCCTCATAAGTATTAACGGGCGGCACTT TAGCAGTTTAAGGCGGCAATTGCCCGACTCTCTGGGACCGACGGGCAAATGCGCGCAAAAAAACCACGATTAGCAGCTATCGTTCAGCTACACGTGGCGC CAGCTTGGGGCATAATGCCGACACTTTCGTGACCACTGAGGGATTTTCTTCCATACCCCTCGCCTTTTTCACCCTCCTCAGCAGTAGGGTTTTATTTCTT
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| DNA Sequence for Gene |
>PflSS101_3939
|dacB_2
ATGATCAAATCTTTGCGTTCAGTGTTACTTGCCAGTGTTGTCTTGCCCCTGGCCTTTTCCGTTTGCGCCGCTCCCGTCAATAACACCCTGCCACCCAGCG TTGCCCAGGCCTTGCAGAAGGCCAAGCTGCAAAATACCGCGCTGTCCCTGGTGATGCTGCCCCTGAACGGCCCTGGTACCCCTACGGTTTTCAACGCCGA CGTCTCGGTGAACCCGGCCTCCACCATGAAGCTGGTCACCACTTACGCGGCCCTGGAAATGCTCGGCCCCAACCATCAGTGGAAGACCGAGTTCTACACC GATGGCACCCTCAGCGGCGGCGTGTTGCGCGGCAACCTGTACCTCAAGGGCGGCGGCGATCCCAAGCTGAACATGGAAAAACTCTGGCTGCTGATGCGCG ACCTGCGCGCCAATGGCGTGCAGCAAGTCACCGGCGATCTAGTGCTGGACCGTAACTTCTTCAACCAGCCGCAATTGCCCGAGTTCAATGACGACGGCAA CGACGAAAACAAGCCGTTCCTGGTCAAGCCCGACGCCTTGCTGGTCAACCTCAAGGCCCTGCGCTTCGTGACCCGCAATGATTCAGGACGGGTGATCGTA TCGGTCGAACCGCCGATTGCCAGCATCCGCATCGACAATCAGGTGAAAGTCACCAACGCCAAACAGTGCACCGGTGACGTGCGCTACAGCCCGGTGACCG CCGCCGACGGCAGCGTGACCGTAACCGTCAGCGGCCAACTGGGTGATGGCTGCAGCTCGCAGACCTACCTGTCGCTGCTCGACCACGCCACCTACACCGC AGGCGCCGTGCGGGCGATCTGGAAGGAGTTGGGCGGCACCATCCAGGGCCGTGATATCCAGGCACCGGTGCCCAAGGATGCAAAAGTCCTGGCTCGCGCC TTCTCACCGGACCTGGCGGAGATCATCCGTGACATCAACAAATACAGTAACAACACCATGGCCCAGCAGTTGTTCCTGAGCCTGGGTGCACAGTTTCGCA ACGATGCCGATGGCGACGATGCCAAGGCCGCGCAACGTGTCGTGCGCCAGTGGCTGGCCAAAAAAGGCATCACCGCGCCGCACCTGGTGATGGAAAACGG CTCCGGCCTGTCCCGCGCCGAACGGGTCAGCGCCCGCGAGATGGCGGCCATGCTGCAAGCCGCGTGGAAAAGCCCTTATGCGGCGGAGTACATCAGCTCG ATGCCGATCGCCGGCACCGACGGCACCATGCGTAAACGCCTGAAAACCACCGCCCTGCGCGGCGAAGCCCATGTGAAGACCGGCACCTTGAACACCGTAC GCGCCATCGCCGGCTACAGCCGCGACAACAATGGCAATACCTGGGCGGTGGTGGCGATTCTCAACGACCCCAAGCCTTGGGGAGCCTCGTCGGTGTTGGA TCAGGTGCTGCTGGACCTGTATCGCCAGCCGAAGGCCGTTGCAGCCGCACCGGTTCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCACCACATCACCCTGTCTGATCGTTCCCACGCTCTGCGTGGGAATGCTGTTTTGGACGCTCTGCGTCCGCGCTCAAGGCGTGACGCGGAGCGTCTCAG GATGCATTCCCACGCAGAGCGTGGGAACGATCAGCGCGTGGGAACGATCATTCAAGCGTCAGGGCTTCCTCGACCCGATCCCTGCCCGCCTGCTTGGCCA CGTACACCGCCGAATCCGCGCGCAGCAGCAAGCCATCGATACCTTCGTCGAGCCGCCAACTGGCCACGCCGAAGCTGGCGGTGACAACCCCCACCGGCTC CATCGACGCACCGCGCAGCGACTGCCACAACTGCATCGCCAGGCTGTAGGCCTGGGCGCCATCGGTGTTGGGGCACAGCACCACAAACTCTTCCCCGCCG ATCCGGCAAAACACATCGGTGCGGCGCAAGCGTTGGCCGATACGCTTGCACAACTCCTGCAGCACGCCGTCGCCCACGGCATGGCCGTGCTGATCGTTGA
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase
MIKSLRSVLLASVVLPLAFSVCAAPVNNTLPPSVAQALQKAKLQNTALSLVMLPLNGPGTPTVFNADVSVNPASTMKLVTTYAALEMLGPNHQWKTEFYT DGTLSGGVLRGNLYLKGGGDPKLNMEKLWLLMRDLRANGVQQVTGDLVLDRNFFNQPQLPEFNDDGNDENKPFLVKPDALLVNLKALRFVTRNDSGRVIV SVEPPIASIRIDNQVKVTNAKQCTGDVRYSPVTAADGSVTVTVSGQLGDGCSSQTYLSLLDHATYTAGAVRAIWKELGGTIQGRDIQAPVPKDAKVLARA FSPDLAEIIRDINKYSNNTMAQQLFLSLGAQFRNDADGDDAKAAQRVVRQWLAKKGITAPHLVMENGSGLSRAERVSAREMAAMLQAAWKSPYAAEYISS MPIAGTDGTMRKRLKTTALRGEAHVKTGTLNTVRAIAGYSRDNNGNTWAVVAILNDPKPWGASSVLDQVLLDLYRQPKAVAAAPVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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