Pseudomonas fluorescens SS101, PflSS101_2002

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGGTGAAGAAGGCCGGGATGCCGGCGCCGCCTGCGCGCATTTTTTCTGCCAGGGTGCCTTGGGGCGTGAGCACCACCTCAATCTCGCCGCTGAGCAGTT GCTTCTCGAACAGGGCGTTTTCACCCACGTAGGAGGCGATCACTTTGCTGATCTGCTTCTGTTCCAGCAGCACGCCCAGGCCAAAGCCATCGACGCCACA GTTGTTGGAGACCACCGTCAGGTCGCGGGTGCCTTTGCGCTTGATTTCAGCGATGAGGTTTTCTGGAATGCCACACAGGCCAAAACCACCGGAGAGCACG GTCATGCCGTCTTCCAGGCCTGCCAGCGCTTCTTCATAGGACGCCACGCGTTTATCGAAACCTGCCATATGCACCTCTTTTATTGTTTGTGGTCCAGCCA GTGAGTTGAGTGTTGCGCCAGCGGATTGATTTGTTAAGTTGTTTTTTAAGGTTGATTGATTTAGAAAACAGCATAGTCCAATCGTCGTCCGGAGCAGCTC
DNA Sequence for Gene
>PflSS101_2002
ATGACCGTCAAACAGATGCGTGCCTTTCTCGCCGTCGCGCAAAGCCTGAGTTTTGCCGCTGCCTGCGAGCGTTTGCACCTCTCCCAATCGGCGTTGAGCT TGACCATCAAGGGCCTGGAAGAAGGTTTAGGCGGGCGCCTGTTCAGCCGCAATACCCGTAACGTCGCGCTGACCCCTGAAGGTGAATCCCTGTTGCCCCT GGCCCGCCGGTTGATTGCCGATTGGGACAACGCCGAAGACGAACTGCGCCAGCGTTTTACCCTGCAACGCGGCCGAGTCACGGTGGCGGCCATGCCGTCG TTCGCGGGGAACCTGTTGCCGCCGATCCTGAAGATATTCCGCGCCCGTTACCCTCAGGTGAACGTGACGGTGCATGACCTGATCAATGAGCAGGTGCTGG AGATGGTGCGCGACCGTCAGGTGGAGCTGGGGGTGGCGTTCGAGCCATCAGATGGCTCGTCATTGGCGTTCACGCCGCTGTACCTGGACCGCTTTATCGC CGTGGTCCCGGGAGATTCAGCCTTGGCACAGCGCGCTGAAATCGACTGGAAAGCTCTATTGGAACAGCCGTTCATCACCCTGCAACGGCCTTCCACCGTG CGAGTAATGCTGGAAGAGCACCTGGGGGCCTTGCAGATGAAATTGCCCGTGGCCTTGGAAAGCCATCAATTGGCGACGGTGGGCAAGATGGTTGCCAGCG GTTTGGGGGTCAGCGCGGTGCCGGCGTTATGCGCCAGGCAGATGGAAGAGGCCGGAGCCCATTGCATTACCTTGACCGGCCCGGTGATCGAACGGCCGAT TGGGGTGCTGACCAAGCCGGGGCATGAACTGTCGGCGGCGGCGCAGGTGTTGTTTGATATCTTTCGAGATGAAGCGGGGAAGGGCAGGTTTCCAACTTTT TAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGGTAATACAAATGTGGGCGCTGGCAAGCCAGCGCCCACATTAATTAAGGACTACTTAGTAGTAACGGTCGATCACTTTAACTTGCGAGCTGTCTTTG AAAGACGCCCAGGCATTATTAAGTGTGTCGAACACCTGCTCGATAAAGTTGCGGTCAGCCGCGGCTTTCTTGCCGACATAACCCTGGCCACGGCGGTACA TCTTCAAGCGCGCCGCCAGCTCACGGTTATTGCGGTCAAACTCGGCTTCTTCGGTATGGGGCGCCAGGCAGTCAATTTGCACTTCGCCCGATTTGCCAAT CCACAGGATATGGTCGTCGAGTGTGTCTTTCTGCGCTGCGAACATCTCAGCCAATTCATCGATAGTTGGTTGGTTGTTCAGATTCATGTGTAAGCCCCTT GACCAGTTGGCGATCTATCAGTTGATTCGTTAATACCAGTTGAGTTGTCTCCGGTTACTAAAACCGGGCGTCAGCGACGGGCTGCCGAATACGGGCAGGG
Amino Acid Sequence
>LysR family transcriptional regulator
MTVKQMRAFLAVAQSLSFAAACERLHLSQSALSLTIKGLEEGLGGRLFSRNTRNVALTPEGESLLPLARRLIADWDNAEDELRQRFTLQRGRVTVAAMPS FAGNLLPPILKIFRARYPQVNVTVHDLINEQVLEMVRDRQVELGVAFEPSDGSSLAFTPLYLDRFIAVVPGDSALAQRAEIDWKALLEQPFITLQRPSTV RVMLEEHLGALQMKLPVALESHQLATVGKMVASGLGVSAVPALCARQMEEAGAHCITLTGPVIERPIGVLTKPGHELSAAAQVLFDIFRDEAGKGRFPTF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site