Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CACAACCAGCACATAGGGAATAGTAGGCACCAAACCTGAAATTGCTCAAGGCGCACTCGTCATTCCCCGCCGCTGATGGATATAGAAAGGGCCTCGATCA ATCGGCGACCGATAGCCTGAACATTGCCGGCAGTTGAACCTTGAGACGAACTGGCGCTCTTAAAGTCACCTCTAGATGCGCAAAAGATGCCTGGCGCAGT AAAGCCAAGCGCGACCAAAGTGCCCCGCTTCGTTATATAAAATTTCATCGATTTACAAGGCTTAACACATGCGGGCCGGCCCTTTCAGCCTGGATCCAAT GTTCGTCGAGGCGCAAAAAACTGGACGGTTTTCATACAAACCGTCAAAAGATTAGCCAAAATAGATTCGGCACAAGAAATTTTTTTGCTTCTTGCGCAAC GTCAGTTTACTTACTACAAGTAATGGGTAGTATGTACGCCGGCTATTAGCTCACTCTGAGAAAGTAGCCATTAAATTGAAAGTCCTTGAAGGGGAACACG
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DNA Sequence for Gene |
>PflSS101_1709
|oprI
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGTCTCCAAAGAAACCGAAGCTCGTCTGACTGCAA CTGAAGACGCAGCAGCTCGCTCCCAGGCCCGTGCAGACGAAGCCTACCGTAAAGCTGATGAAGCTCTGGCTGCTGCTCAAAAAGCACAACAGACTGCTGA CGAAGCTAACGAGCGCGCTCTGCGCATGCTTGAAAAAGCAAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TAATCCTTCGGGGTTGTTATCAAGCCGATCCATTTATGGGTCGGCTTTTTTTTGCCTTTGATTTGGCACGCGCCACCTGTAGGAGCGAGCTTGCTCGCGA AGATGGTCAACGATGACGCGGGCGTCCTGAATGACAGCGGCGCCCTCAGGTTTTTCGCGAGCAAGCTCGCTCCTACAGCAGGTCGGCCGGCGTACTTGAG GCCACAGGCGCCGCGCCTGGCACACCAATTTCGGTCGGCAAGCCATCCTCGGCGGCGACCACGTCACGTACCTGGTCCCAGTTGACCCGCAGGTTATTGG ACAGGTCTTCGCGCTTGAGCAACGCATTGATAACTGCGGTGTGCTTGTCGACCACCGAGGGCGTACCGTCATCGTTCAACGGCGTGTGGGCTTCAAGGTA GACCTTGCCGCCGCTGCTGCCGAACTTGTACGCGTCGTTGATGATGCGCACTGACGTGCCCACCGGCACCATGCCCGCCATTTCCAGCACGTTGTTATTG
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Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSVSKETEARLTATEDAAARSQARADEAYRKADEALAAAQKAQQTADEANERALRMLEKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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