Pseudomonas fluorescens SS101, PflSS101_0417 (phaC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCCAGGCGTTATATCCAACCGTCCCATGTGGTGCGCATTGCACCGATGATTTATGGCGGCTCGTTCCGCCGTGATTCCAAACTGGCCGCCGAACACGC CAGCAAGGTGCGCTCGGCCGGCAAGCTGGGTTACTACTGGCAGCTGTTCGCCGGGTTGGGCTGGACCAGCATTCATTGGCTGCACAAGATCCGCCAGCCC ACCCTGGTGCTGGCCGGCGACGATGACCCGCTGATCCCGCTGGTCAACATGCGCCTGCTCGCCTGGCGCATCCCCAATGCACAGTTGCACATCATCGATG ACGGCCACCTGTTCCTGATCACCCGGGCCGAAGCCGTGGCGCCGATCATCATGAAGTTTCTCGAAGAGGAGCGCCTGCGCGCCGTGATACATCCGCGACC GGCGGTGTGAAGGAACACACCACCGCGCAACTTGCCAGGAACCGACTATGGTTCTGGATTGGCGTGCCTGCTTGATGTCTTGACGAAGGAGTGTTGGCTC
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| DNA Sequence for Gene |
>PflSS101_0417
|phaC
ATGCGAGAAAGACCCGTGACGAACCCGGCGCCCACCCCCGCTACGTTCATCAACGCACAAAATGCGATCACCGGCCTGCGTGGCCGGGACTTGCTGTCGA CCCTGCGTACCGTGGCCGCGCATGGCCTGCGCAACCCGGTGCACACCGCCCGCCACGCCCTGGCCCTGAGCGGCCAACTGGGCCGCGTGCTGCTGGGTGA GACCGTGCACGAACCCAACCCCAGGGACCATCGCTTCAGCGACCCCACCTGGAAGCTCAACCCGCTGTACCGCCGCAGCTTGCAAGCCTATCTGAGCTGG CAAAAACAGACACGGCAGTGGATCGATGACAGCGCCCTCAGTGACGATGATCGCGCCCGCGCGCAGTTCGCCTTCGCCCTGCTCAACGATGCCGTGTCCC CTTCCAACACCCTGCTCAACCCGCTGGCGATCAAGGAGTTGCTCAACTCCGGCGGCAACAGCGTAGTGCGTGGCGTGAGTAATTTGTTCGAAGACCTGCT GCACAACAACGGTTTGCCGCGCCAGGTCAGCAAGCACGCTTTCGAAGTGGGCAAGACCGTGGCGACCACGCCCGGTTCGGTGGTGTTTCGCAATGAGCTG CTGGAGCTGATCCAATACAAGCCCATGAGCGAAAAACAGTACGCCAAGCCACTGCTGGTGGTGCCGCCGCAAATCAACAAGTACTACATCTTCGACCTGA GCCCGGCCAACAGCTTTGTGCAATACGCGCTCAAAAACGGCCTGCAGACCTTTATGGTCAGCTGGCGTAACCCGGACGTGCGGCATCGCGAATGGGGCCT GTCCACCTACGTGGCGGCGCTGGAGGAAGCGCTCAACGTGTGCCGGGCCATCACTGGCGCCCGCGAGGTCAACCTGATGGGCGCCTGCGCCGGCGGCCTG ACCATCGCCGCGCTGCAAGGCCACCTGCAAGCCAAGCGCCAGTTGCGGCGCATCTCCAGCGCCAGTTACCTGGTGAGCCTGCTGGACAGCCAGATCGACA GCCCCGCAACCCTATTCGCCGATGAGCAAACCCTGGAGGCCGCCAAGCGCCGCTCCTACCAGCAAGGCGTGCTGGATGGTCGCGACATGGCCAAGGTGTT TGCCTGGATGCGCCCAAACGACCTGATCTGGAATTACTGGATCAACAATTACCTGCTGGGCAAGGAACCGCCGGCATTCGACATCCTGTACTGGAACAAC GACAACACCCGCCTGCCCGCCGCCTTGCACGGCGACCTGCTGGACTTCTTCAAGCACAACCCCCTGAGCCATCCCGGTGGGCTGGAGGTGTGCGGCACGC CCATCGACTTGCGCAAGGTCGCGGTGGACAGCTTCAGCGTGGCCGGCATCAACGATCACATCACCCCGTGGGATGCGGTGTACCGCTCCACGCAACTGCT GGGTGGCGAGCGGCGCTTTGTGCTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGGCCAACTACGTCGAGAACCCCAAG CTGAGCAGCGACCCGCGCGCCTGGTATTACGACGCCCAGCACGTCGAGGGCAGTTGGTGGCCGCAGTGGCTGGAGTGGGTGCAAAAACGCTCCGGTGTAC AACGCGAAACTCTCACCGCCCTGGGCAACCAGAATTACCCACCGATGGAAGCGGCGCCGGGCACTTACGTGCGGGTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCAGCGATCAACTTTAAGAAGACTGGATGAAGACCCGCGACCGTATCCTTGAATGTGCCCTGCAGTTGTTCAACCACAAAGGCGAACCGAACGTGTCG ACCATGGAGGTGGCCAATGAAATGGGGATCAGCCCCGGCAACCTCTACTACCACTTCCACGGCAAGGAGCCCTTGGTGCTCGGGTTGTTCGAGCGTTTTC AATCTGAGCTGGCGCCACTGCTGGACCCTCCCGCCGATGCGCAACTGGAGGCCGAGGATTACTGGCTGTTCCTGCACCTGATTGTCGAGCGCATGGCCCA TTACCGGTTCCTGTTCCAGGACCTGTCGAACCTGGCCGGGCGCTTGCCCAAGCTGGCCAAGGGGATCCGTCACCTGCTCACGGCGCTCAAGCGCACCCTG GCGTCACTGCTGGCGCGGTTGAAGGCGGCAGGGCAACTGGTCAGCGATACCCAGGCGTTGGGGCAACTGGTGGAGCAGATCACCCTGACTTTGCTGTTTT
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVTNPAPTPATFINAQNAITGLRGRDLLSTLRTVAAHGLRNPVHTARHALALSGQLGRVLLGETVHEPNPRDHRFSDPTWKLNPLYRRSLQAYLSW QKQTRQWIDDSALSDDDRARAQFAFALLNDAVSPSNTLLNPLAIKELLNSGGNSVVRGVSNLFEDLLHNNGLPRQVSKHAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYAKPLLVVPPQINKYYIFDLSPANSFVQYALKNGLQTFMVSWRNPDVRHREWGLSTYVAALEEALNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRISSASYLVSLLDSQIDSPATLFADEQTLEAAKRRSYQQGVLDGRDMAKVFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLRKVAVDSFSVAGINDHITPWDAVYRSTQLLGGERRFVLSNSGHIQSILNPPGNPKANYVENPK LSSDPRAWYYDAQHVEGSWWPQWLEWVQKRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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