Pseudomonas fluorescens SS101, PflSS101_0159

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATTGGCTAGCGTTAAGCGAACGCAATGCTCAAAGCAATGAAGATCCAATGTGGGAGCTGGCTTGCCTGCGAAAGCGGTAGTGCAGTAAGAGTTTTATTAA CTGACACACCGCCTTCGCGGGCAAGCCCGCTCCCACAGGTAGTATTTCCACCCATCGCTGCAGTGGTTCACTCCTCTTGTTGGAATTCCGATAAATGGGA TCCAATTCACAAAACCCCCGCGAACTTTTCCCCCTTCTCCGGTACTAACCTAACTCGACGAACACCTGATGGCTAAGTAATGGCAGTCAGAAAGTCATTC GTCGAATCGCCATCAAAACAGTTGCCGCTTGTCGGAATAATCACCGCAAGTGCCCGACTTAAACTCTTTTGGTGAAAAATTATTATTAATAATCAACAGG TTAGAAAACTAATCAGTCGAACGGCCCCACTTCGCCCGTTTCTAGGCGAGCTGGAAGTTCGATGTTAGTTTCGCGGCCCTTGATTTTCGATGGATCGAAC
DNA Sequence for Gene
>PflSS101_0159
ATGTCTTCGTTATTGCCATGGACCCGGTTATTGCTCTGCACCTTCCTGCTCACCTGCGTGGGCCTGAACAGTGCATCCGCCGCCCCCACGCCTGGCGATC AGGATTTGATCCGCGACCGGCAGAACCGCTTGCTTGAAGAGCAACAGCGGCGCCTCCAGGAACTCCAGGACCTGCCCGGCAAAGCGGACAAGTCCCAAGC CCCGGCAACCCCGGCCGACACCCGTTGCTTCCCCATCAAAACCATCGAACTCAAAGGCGCCGACAGCCTGCCGGCGCCCGACCGCGAGCGCCTGCTAAAG CCCTATATCGGCCAATGCCTGGGCGTGTCCCAGCTCAACGAGCTGCTCAAGGTCATCACCGACTACTACTTGGGCAAAGGCCGCGTTACCAGCCGTGCCT ACCTGCCACAGCAAGACCTCTCCACCGGTCACCTGCAAGTGTTGGTGGTGGAGGGCAAGCTCGAAGCCCTGCGCAGCGCCGATGGCAGCACAGTGACCGA CCGCGAACTGGCCATGGCCTTTCCCGGCAAAGTCGGCGAAGCGCTGAACCTGCGTGAAATCGAGCAACTGGTAGACCAGCTCAACCGCCTGCCGTCCAAA CAAGCGCAGATGGAACTCACCCCCGGCAAGCAAATCGGCGGCAGCGATGTGGTGGTCAAGAACACTGCGCAAAAGCCCTGGCGCGCCAGCCTGTCGCGCA ACAACGACGGGCAGAAAAGCACCGGCGAACAGCAATGGGGCGCTGGCCTGGAGTGGGACAGCCCACTGGGCCTGGGCGACCAACTGATGCTGCGCGGCGG CCACGACGCCATCAGCGACCACCAGAAAACCTCGAAAAACACCATGCTCTACTACAACGTGCCCTGGGGCTGGTGGAACTTCAGCTATACCTACAGCGAA AGTGACTACCGCACCTACGGCGTGACCGACGGCTTCAAATACAAGCAGGACGGCGACAACCAGAACCACCAACTGCGCGCCGAGCGGGTGATCCACCGCG ATGACGTCAGCAAGACCTCGGTCAACGTCGGCCTGGCGCACCTGCGCACCAACAACTACATCCTCGACGTGCGCACCGCGCCCAGCAGCAACCGCCTCAG CGAACTGCAATTGGGCGTCAACCACGGTCGGCGCATCGGCAGTGCCTTCGTCAACCTGGACCTGGGCATGCAAAGCGGCATCGGCCTGCTCGACGCCCAG GCCCAAGACGAGCGTGACCCAGCAGGCCGTCGCCAGCCGAATGCGCGCTACCGCAAATACACCGCCACCGTCAGCTACCTGCAGCCTTTCAGCCTGTGGG GCGAGTCGTTCAGCTTCAGCAGTTTGGCCACCGGGCAACGCAGCGAAGACCCACTGTTTTCGCCGCAGCGCATGAGCCTTGGCGGCTCGGCCTCGGTGCG TGGCTTCAAGGACCAATTGCTGACCGGCGACAGCGGCGGCTACTGGCGTAACGAAGTGCGCTGGGCGCGCCCGGTGACCCTCGACTGGATGCGCCCGGCC TTCGCCGAGTACGGCGCCAGTGTCGGCTACGACCAAGGCGTGATCCGCAACGACCGCTACAACGACAACGTTCATGGCCGGGTGTCCAGCAACTCCCTGG AGCTGTTCGCCCGAGGCAAACACGTCAGCACCAGCGTGACCTTTGCTCATTCGTTAGAAAGACCCGGTGTAGTCACCGAGCGCGAAGCGCCGATCTACTT TCGCATGGATTTCTTCCTGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCAACGCCCCGCTGCATGAGAGCCTGACAATGGATGTTCGCCAATTCGCCTTCCTGGCCCGCCAACCTTCTGCCGCCCTGAAGCGCCGGGACGCGTTCT TCGGCCTGCCCAAGCGCGGGCTGGCGTTGATCCTTGCCAACGCACTGTTCTGGCAGCCGCTGCTGGCCCAGGCCGAGGGCATTGTGGTCAGTGCGCCGGG CACCACCGTAGGCGCGGCGGGCAATGGCGTGCCGGTGGTAAACATCGCCACCCCCAATGGCGCGGGCTTGTCCCATAACCAGTTCAAGGACTACAACGTC GGCCCCAACGGCGTGATTCTCAACAATGGCAACGGCGCCATGGTCAACACCCAACTGGGCGGGATCATTGTCGGCAACCCCAACCTCAAGGGCGGCGCGG CGAACGTCATCCTCAACGAAGTCAACGGCGGCAGCCCCAGCCAGTTGCGCGGCTATACCGAAGTGGCGGGGCAGTCGGCCAAGGTCATCGTGGCCAACCC
Amino Acid Sequence
>hemolysin secretion/activation protein, ShlB family
MSSLLPWTRLLLCTFLLTCVGLNSASAAPTPGDQDLIRDRQNRLLEEQQRRLQELQDLPGKADKSQAPATPADTRCFPIKTIELKGADSLPAPDRERLLK PYIGQCLGVSQLNELLKVITDYYLGKGRVTSRAYLPQQDLSTGHLQVLVVEGKLEALRSADGSTVTDRELAMAFPGKVGEALNLREIEQLVDQLNRLPSK QAQMELTPGKQIGGSDVVVKNTAQKPWRASLSRNNDGQKSTGEQQWGAGLEWDSPLGLGDQLMLRGGHDAISDHQKTSKNTMLYYNVPWGWWNFSYTYSE SDYRTYGVTDGFKYKQDGDNQNHQLRAERVIHRDDVSKTSVNVGLAHLRTNNYILDVRTAPSSNRLSELQLGVNHGRRIGSAFVNLDLGMQSGIGLLDAQ AQDERDPAGRRQPNARYRKYTATVSYLQPFSLWGESFSFSSLATGQRSEDPLFSPQRMSLGGSASVRGFKDQLLTGDSGGYWRNEVRWARPVTLDWMRPA FAEYGASVGYDQGVIRNDRYNDNVHGRVSSNSLELFARGKHVSTSVTFAHSLERPGVVTEREAPIYFRMDFFL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site