Pseudomonas fluorescens SS101, PflSS101_0004 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCTTTGAGCAGACCTTGAGCGAGTTGTTGGACCTCGAGGGGCTGACGCTGAGTTATTACCGGGGTTGGGACAAAGAACGTGAGCTGAGTGCAGTGCTC GCAACGTCCTTGCAACGGGATCAGCAAATCGGCCACACCCAGGCCGGACCCCAACGCGCTGATTTGCGCCTTAGATTAGGTGCACACAATGCGGCGGACA TCTTGTCCCGCGGCCAGCAGAAGTTGGTGGTCTGTGCGTTGCGTATCGCGCAGGGCCATTTGGTTAGCCAGGCTCGACGCGGTCAGTGTATTTATTTGGT GGATGACTTGCCGTCGGAGCTCGACGAGCAGCACCGCCGCTCGCTATGCCGCTTGTTGGAAGACTTACGCTGCCAGGTGTTTATTACCTGTGTAGACCAC GAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>PflSS101_0004
|gyrB
ATGAGCGAAGAAAACACGTACGACTCGACCAGCATTAAAGTGCTGAAAGGTTTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGCGACACCGATG ATGGTAGCGGTCTGCACCACATGGTGTTCGAGGTGGTCGATAACTCCATCGACGAAGCTCTGGCCGGTCACTGCGACGACATCAGCATTATTATCCACCC GGATGAGTCCATTACCGTGCGTGACAACGGTCGTGGCATCCCGGTAGACGTGCACAAAGAAGAAGGCGTTTCGGCGGCAGAGGTCATCATGACCGTGCTC CACGCCGGCGGTAAGTTCGACGACAACTCCTATAAAGTATCCGGTGGTTTGCACGGTGTAGGTGTGTCGGTAGTGAACGCCCTGTCCGAAGAACTGATCC TGACTGTCCGCCGTAGCGGCAAGATTTGGGAGCAGACCTACGTCCACGGCGTACCACAGGAACCGATGAAAATCGTCGGCGACAGTGAGACCACCGGTAC CCAGATCCACTTCAAGCCATCGGAAGAAACTTTCAAGAACATCCACTTCAGCTGGGACATCCTGGCCAAGCGGATTCGTGAACTGTCTTTCCTTAACTCC GGTGTCGGCATCGTCCTCAAGGATGAGCGCAGCGGCAAGGAAGAGCTGTTCAAGTACGAAGGTGGCCTGCGTGCGTTCGTTGAATACCTGAACACCAACA AGACTGCGGTCAACCAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAATATTCCACAACGCGATGGCGGTACCCACTTGGTGGGTTTCCGTTCCGCGCTGACGCGTAACCTGAACACCTACATCGAAGCG GAAGGTTTGGCGAAGAAACATAAAGTCGCCACCACCGGTGACGATGCCCGTGAAGGCCTGACGGCGATCATCTCGGTCAAGGTACCGGATCCGAAGTTCA GCTCCCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAGACTGCGGTTGAACAGGAAATGGGTAAGTACTTCTCCGACTTCCTGTTGGAAAACCCGAA CGAAGCCAAGCTGGTCGTCGGCAAGATGATCGATGCTGCCCGCGCCCGTGAAGCCGCGCGTAAGGCCCGTGAGATGACCCGCCGTAAAGGCGCGCTGGAT ATCGCCGGCCTGCCAGGCAAACTCGCTGACTGCCAAGAGAAGGACCCTGCCCTCTCCGAACTGTACCTGGTGGAAGGTGACTCTGCTGGCGGTTCCGCCA AGCAGGGTCGTAACCGTCGCACCCAGGCCATCCTGCCGTTGAAAGGTAAGATCCTCAACGTCGAGAAGGCCCGCTTCGACAAGATGATTTCCTCCCAGGA AGTCGGCACCTTGATCACAGCGTTGGGCTGCGGTATTGGCCGCGACGAGTACAACATCGACAAGCTGCGCTACCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATCCGTACCCTGCTGCTGACCTTCTTCTTCCGTCAGTTGCCGGAGCTGATCGAGCGTGGCTACATCTACATCGCTCAGCCGC CGTTGTACAAAGTGAAAAAGGGCAAGCAAGAGCAATACATCAAAGACGACGACGCCATGGAAGAGTACATGACGCAGTCGGCTCTGGAAGATGCCAGCCT ACACTTGAATGACGAAGCGCCGGGTATCTCCGGTGAGTCGCTGGAGCGACTGGTCAACGACTTCCGCATGGTCATGAAGACGCTCAAGCGTTTGTCGCGC CTGTACCCTCAGGAGCTGACCGAGCACTTCATCTACCTGCCGGCCGTAAGCCTGGAGCAGTTGGGCGACCACGCCGCCATGCAGGATTGGCTGGCCCAAT ACGAAGTGCGCCTGCGTACTGTGGAGAAGTCTGGCCTGGTGTACAAAGCTAGCCTGCGTGAAGACCGCGAACGTAACGTATGGCTGCCAGAGGTCGAACT GATCTCCCATGGCCTGTCGAACTACGTCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAGACCGTAGTCACCCTCGGCGCGCAACTGAGCACC CTGCTGGACGACGGTGCTTACATCCAGCGTGGCGAACGCAAGAAGCAGGTCAAGGAGTTCAAAGAAGCCTTGGACTGGTTGATGGCGGAAAGCACCAAGC GTCATACCATCCAGCGCTATAAAGGTCTGGGCGAGATGAACCCGGATCAGCTGTGGGAAACTACCATGGACCCTGCTCAGCGCCGCATGCTGCGCGTGAC CATCGAAGACGCCATTGGCGCAGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCTCGTCGTGACTTCATCGAGAGCAATGCTTTGGCGGTG TCTAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTACATCTGCTAAAAACAAAAGGCCAACGCTTAGCGTTGGCCTTTTTTGTTGGTTCGCAGTCGCGCATTTTTAAATGCTCCACGTGGAACATCGAC GTATTTAACTTTCCACAGCGGGTGTCACACTCTCCAATCGATACCCGTACCCGTAGATCGTCAACAGCTGCCAGCCGCGATCCGCCGTCAGCCCTAGCTT GTTACGCAGGCGGTAGATATGCGTGTCCAACGGCCGCGACGAGACCATTTCTTCGTGGCTCCAGAACCGCTCATACAGGTACTCGCGAGACAACGGCCGG GCCAGGTTGGCAAATAGACAACTTGCCAGGCGGTATTCCCGTTCTGTCAGGTTGATGGGTTTGCCTGCGCGTGTGACGGTCAGTTCGGCATCGTCGAATG TCAGGTCGTTAAAGCTCTGCACTTCCTGGCTAGCCGACTTCTGCAAACCGTGGCGCCGCAGGACGGCGCTGACTCGAGCTTTGAGTTCGTTGGGCCTAAA
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSETTGTQIHFKPSEETFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSR LYPQELTEHFIYLPAVSLEQLGDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLST LLDDGAYIQRGERKKQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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