Pseudomonas fluorescens Q2-87, PflQ2_5257
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCCAGGTCGGCATCATCGCGCTGGCGATCGTGCACACCGATGCGGCGAACAGCGCCGCGACCATCACTGGCTTGCGGCCGATGCGGTCGGAAATCGGG CCGGTGATCAACAGGCCGATGGCGAGCAGGCCGGTCGCCACCGACAGGATCAGGCTACTTTGCGCCGCATTGACGGAGAACTCCCTGGACAACAGCGGCA TCATCGGCTGCACGCAATACAGCAGGGCGAACGTTGCAAAGCCACCGCTGAACAGCGCCAGCACCGTGCGCATGAACTTCGGCGTGCCTTTTTCGATGTA AATGTCTTTGAGTTCGGCGACGGCGTCATCCTGCACACGAGGCGGGATTTCATGGGCCAATGGAGCGAGAGCAGTTTTCACGGTGGACCTCAGCGAAGCA CGGCCAGGCAGGCAATGGAAAAAGCATATAGCCGGGTAATCTTTCTATCCAATATATTGTTCGACCTGTTTAAGACGTTTTACGACCTATTGGATTGCCC
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| DNA Sequence for Gene |
>PflQ2_5257
ATGGAATTGCGTCACCTGCGCTACTTCATCGCCGTCGCCGAAGAACTGCATTTCGGCCGGGCCGCCCTGGCCCTGGGTATTTCCCAGCCTCCTTTGAGCC AGCAGATCCAAGCCCTGGAGCAGGAGATTGGCGCGCGGTTGTTCGAGCGCACCAATCGTCGGGTCGAATTGAGCGAGGCCGGGCGATTGTTCCTCGAAGA GGCACGCCGGGTATTGGCCCAAGTCGACAAGGCGGCTGACGTGGCCCGCCGTGCCCAGTTGGGGGAACTGGGCGAGCTGAAAATCGGCTTCACCTCTTCG GCGCCATTCAACTCCACCATTCCCCAGGCGATATTCGCCTTTCGCCAACGCTTTCCGGCCGTGCACCTGAACCTGCGGGAAATGAGCAGCACCCAGGTGG CCGATGCGCTGCTGGATGACGCGATCGAGGTGGGCATCATGCGTCCGCTGCCATTGCCCGACTCCCTCAGGGAAATCGAACTCAGTCGCGAACCCCTGGT GGCTGTGCTCAGTGCCAAGCATCCCCTGGCCCAGGGCAATGAAGAAGGCCTGTTTCTTTCGGCATTGGCCCAGGAACCGTTCGTGTTCTTCCCCCGCAGC TACGGCAGCGGCCTCTATGCCCAACTCCTGAGCCTGGCCCGCGACGCTGGCTTCAGCCCGCATTTCGCCCAGGAAGCCGGCGAAGCCATGACCATCATTG GCTTGGTCGCGGCGGGGCTTGGCGTTTCGGTATTGCCAGCGTCTTACCAACGCATGCGTATCGATGGCGTGGTCTACCGGCCGCTGCTCGACCCGGCGGC GGTCTCGGCGGTGTGGCTGGTGCAGCGCAAGGACCAGCGCTCGCCGATGGCGAAGGCGTTTGTGGCGTTGTTAAACGATGGGGTGGAGTTATCGACGCAA GCATCTCTCAATCTTGCGGAACGCTCCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGGGCTCTGGCTAAGTGTGAAAAAGGGCTCAGACTTTTTTGTACAGGCTGTACCGTCCGATCATTATCTATTTCGCAAAAACGCCAAAATCGCCTCGC GGGTAGCCTGCGTTTGTTCTTCCAGCACCCAATGCCCGGTGTCTACCAATATCAATGAATGCGGTTGTGTAGCGATGCACAAGGCCTGCTCGGCCAAGGT CTTTCCTCTCGAATGGTCACCGCCGATGGTGAGCACAGGAACAGTCAGTTTATTCTTGGAAAACTCCTGGTTGTCATTCGCATCATCCGTTATCCAGGCT GAATACAGCTTGAAGGCGGCTTCCATGCGTCCGGGCCGGGAGTAGTCTTCCACCAGCGCCTGTCGCACCTCATCTGGCACTTTGTCGTTGCCTTCGAAGA CAAAATCATCAAAAAACATGTCCAAGTAGGTTTTTTCCTGCCCTCGGATCATGCGGATGGCCGTTTCGCCAAAAAAGCGGAAGTGCCATTTGCTCGCAAT
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| Amino Acid Sequence |
>LysR family transcripitonal regulator
MELRHLRYFIAVAEELHFGRAALALGISQPPLSQQIQALEQEIGARLFERTNRRVELSEAGRLFLEEARRVLAQVDKAADVARRAQLGELGELKIGFTSS APFNSTIPQAIFAFRQRFPAVHLNLREMSSTQVADALLDDAIEVGIMRPLPLPDSLREIELSREPLVAVLSAKHPLAQGNEEGLFLSALAQEPFVFFPRS YGSGLYAQLLSLARDAGFSPHFAQEAGEAMTIIGLVAAGLGVSVLPASYQRMRIDGVVYRPLLDPAAVSAVWLVQRKDQRSPMAKAFVALLNDGVELSTQ ASLNLAERSK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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