Pseudomonas fluorescens Q2-87, PflQ2_4923 (oprG)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGGAAGGTCGCACCACGGATTTCTTGCTGGTGCCATATTTCGGCGCCTGCATCCATGTGCCGCCGCCGCCCTCGAATCAGATCGTGCATGTGAAAAGCG AGGTGGGGGTCAAGCTCGACGAGTTGTACCAACCGTATTGGGTCGAAGGGGCAATGCAGGTCAAGCCGTCCACCAGCGAACTGGCCGATGCCGGGTATCA GATGGAAGCCGAGAAGATTTATGTGTATGAGTTGCCGGAGTGAATCCGGCTATTGTTTATTGCCTGTCACATAGCTTTCGCGAGCAAGCCCGCTCCCACA GTCGACCGCGTTTTTTCAGTAGGAATGCGGCCAAACTGTGGGAGCGGGCTTGCTCGCGAAAGGGCCCTCAAAGTTTACTCATCAATGATTTATTGAGCTG AGTCAATTAATCGGCCAAGACTCATTGAGCTGAGTCAAAAGACCGGGGCAGACGGCTTCGTACGATGGGACATCAAATTTAGATGCCCTTTGGAGCCCCC
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| DNA Sequence for Gene |
>PflQ2_4923
|oprG
ATGCACAAGTTCTTGCTCAGCGCTTCCCTCGTCGCCCTCGCGCTCGCCGCCCCGATCGCCCAGGCCCATACCGCTGGCGATATCATCGTTCGCGCCGGTG CCATTACCGTCAATCCTGAAGCCGACAGCTCCAGCGTCAAGGTCGACCGTGGCCCGCTGGCCGGCGCCGACCTGGGCGGCAAGGCCACCATGAGCAGCGA CACGCAATTGGGCCTGAACTTCGCCTACATGATCACCAACAACTGGGGCATCGAGTTGCTGGCGGCCTCGCCGTTCGAGCATGACGTGAAAATCAAAGGC ACCGCCCTGGGCGCGGCCAACAACAAGCTCGGCACCCTCAAGCACCTGCCGCCGACCCTGAGCCTGGTCTACTACCCACTGGACGCCAAATCGGCCTTCC AGCCTTATGTCGGCGCCGGTATCAACTACACCTGGATCTACGACGAACACGTCGGCAGCGAAGCCAGTGCCAACGGTTTCAGCAACTTTCGCGCAAGCAA CAGCTGGGGCATGGCGTGGCAAGTGGGCGCTGACTACATGCTGACCGACAACATCATGATCAACGGCCAGATTCGCTACATCGACATCGACACCACCGCG TATGTGGATAACAACGCCGTGGCCGGCGGTACCCGGGCCAAGGTGAATGTCGATGTCGACCCGTGGATCTACATGGTGGGGTTGGGTTACAAGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGACTCGATAGCGACACAATCCATGTGGGAGCGGGCTTGCTCGCGAATGCGGTGGGTCAGTCACTTAACAGGTGACTGACAGAACGCATTCGCGAGC AAGCCCGCTCCCACAGTGGGTTTTGTGGCTGCTGGAAACTCAGCGGCCCAGCAACCGCGCCAACCCCACGTTCAGCGGCGTCTGCTGGGGGAAGCTGAAG CGCTGCACCAGCCGACGATTGTCAGCCCGCGAATGGCGAATATCCCCAGAGCGCGCCGGGCCGTAGCTGATCGGCGGCAAGTCACCCACCACTTCGGCCA GGGCCTTGAGCATTTGCTTGAGCGTCGTGGCCTGGTTCCAGCCGACGTTCACCGCTCCGACTTCCACCTCAGGCTTTTTGATGGCCTGCACCAGCAAGTC CACCAGGTCTTCGACGTAGACAAAATCCCGGGTCTGCTCGCCGTCGCCGAACACAGTGATCGGCAGGCCTTTCTGTGCCCGCTCGCTGAAGATGCTGATG
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| Amino Acid Sequence |
>outer membrane protein W
MHKFLLSASLVALALAAPIAQAHTAGDIIVRAGAITVNPEADSSSVKVDRGPLAGADLGGKATMSSDTQLGLNFAYMITNNWGIELLAASPFEHDVKIKG TALGAANNKLGTLKHLPPTLSLVYYPLDAKSAFQPYVGAGINYTWIYDEHVGSEASANGFSNFRASNSWGMAWQVGADYMLTDNIMINGQIRYIDIDTTA YVDNNAVAGGTRAKVNVDVDPWIYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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