Pseudomonas fluorescens Q2-87, PflQ2_4831 (mrdA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACCAGCAATAAGGGTTCGCTGTGCGACTGCGCCTGATCGCCGTCGGTTCTCGCATGCCCAAATGGGTGGAAGAAGGCTGGCATGAATATGCCAAGCGT CTTCCGTCCGAGCTGGCGCTGGAACTGGTGGAAATTCCGCTCAATACCCGTGGCAAGAACGCCGACGTGGCGCGCTTTATCCGCCAGGAAGGCGAGGCCA TGCTGGCCAAGGTCGGGCCGAACGAGCGGATCGTCACCCTCGAAGTCCATGGCAAGCCCTGGAGCACCGAGCAACTGGCGGTGGAGCTCGATCGCTGGCG ATTGGACTCGCGCACGGTCAATTTCATGGTCGGTGGCCCGGAAGGGCTGGCGCCGGAAGTCTGTGCCCGGGCCGATCAGCGCTGGTCGTTGTCGCCGTTG ACGTTGCCGCACCCACTGGTGCGGATCCTGATCGGCGAACAGTTGTATCGTGCCTGGACAGTCCTGTCCGGGCACCCTTACCACAAGTAATCCTGCCCTC
|
|
| DNA Sequence for Gene |
>PflQ2_4831
|mrdA
ATGCCCCAGCCGATCCGCATCAAGGACCACGAAAAAGACGCCCGCCTGGTGCGAGGCCGCGTCGTGTTCGGCGCTATAACGGTGGTGACGCTGATCGGCG TGCTGATCGCGCGGTTGTATTTCCTCCAGGTGATCCAGTACGAGTATCACTCGACGCTGTCGGAAAACAATCGAGTGCATGTGCAACCGATTCCGCCGAC CCGCGGGCTCATTTTCGACCGCAACGGCGTGGTGGTGGCGGATAACCGGCCCAGCTTCAGCCTGAGCATGACCCGCGAACGCTCCGGCGACTGGCAGCAG GTGCTCGATGTGATCGTCGAAGTGCTGCAACTGACCCCCGAGGACCGGGCGATCTTCGAGAAGCGCATGCGCCAGGGGCGCCGGCCATTCGAGCCGGTGC CGATCCTGTTCGAGCTGACTGAAGAACAGATCGCCCTGATCGCCGTGAACCAGTTCCGCCTGCCCGGCGTCGAGGTGGTGGCGCAACTGGTGCGGCATTA TCCCCAGGGGCCACACTTCGCCCACTCGGTGGGCTACATGGGACGGATCAACGAGAAAGAGCTCAAGACTCTCGATCCGGTCAATTACAGCGGCACCCAC CATATCGGCAAGACCGGCATCGAGCGTTTCTACGAGCCCGAATTGCACGGGCAGGTGGGTTACGAAGAGGTCGAGACCAACGCCCGCGGGCGCGTCTTGC GGGTCCTCAAGCGTACCGATCCGATTCCCGGCAAGGACATCGTCCTGAGCCTGGACATCAAGCTGCAAGAGGCCGCCGAAGCGGCGCTGGGCGGGCGCCG TGGCGCTGTGGTGGCGCTGGATCCGAACACCGGCGAGGTGCTGGCGATGGTCAGTCAGCCGAGTTTCGACCCGAACCTGTTCGTCACCGGCATCAGCTTC AGGGCCTACGCCGAGCTGCGCGATTCCATCGACCGGCCGCTGTTCAACCGGGTGCTGCGCGGCCTCTATCCGCCGGGCTCGACCATCAAGCCGGCCGTGG CGATTGCCGGGCTGGACTCCGGCGTGGTGACCGCGTCGAGCCGGGTCTTCGATCCCGGCTACTACCAACTGCCGAACTATGACCACAAGTACCGCAACTG GAACCGCACCGGCGACGGCTATGTGGACCTGGAAACGGCGATCATGCGTTCCAACGACACCTACTTCTATGACCTGGCCCATAAGCTGGGAATCGACCGA CTGTCGTCGTACCTGGGCAAGTTCGGCATCGGCCAGAAAGTCTCCCTGGACATGTTCGAAGAATCGCCCGGCCTGATGCCGTCTCGGGAATGGAAGCGCG CCACCCGGCGCCAGGCCTGGTTCCCAGGTGAAACCCTGATTTTGGGGATCGGCCAGGGCTACATGCAGGCCACGCCTTTGCAGCTGGCCCAAGCCACGGC GCTGGTGGCGAGCAAGGGCAAGTGGTATCGCCCGCACTTGGCCAAGACCATCGAAGGGCAGAAACCGGTGGACCCGGACCCGATGCCGGACATCATCCTG CGCAACCCGTCGGACTGGCAGAAGGTCAACAACGGCATGCAGCAAGTGATGCACGGCGCCCGAGGCACCGCTCGCAAGGCAGCCATCGGCTCGCCCTACC GAATTGCCGGCAAGAGCGGTACGGCCCAGGTCGTCGCGATCAAACAGGGCGAGAAATACGACCGCTCCAAGGTTCAGGAACGCCACCGCGACCACGCCTT GTTCGTCGGCTTCGCCCCGGCCGACAACCCGAAGATTGTCGTGGCGGTGATGGTCGAGAACGGCGAGTCCGGTTCCGGCGTTGCGGCTCCGGTGGTGCGT CAGGTCATGGACGCCTGGTTGCTGGATGAGCACGGCCAGCTCAAGCCGGAATACGCAAGCCCCACCACTGCGGAGGCTACGGCCCGTGAAGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTCGACCGGATCCTCTCCAGCGAAGACGTGATGCGTCGGCGTGCCACGCTGTTGCAGCGCATGCACATTGACGGCCCGCTGCTGATCCTGTTGCTGATC CTGGCCGCCGGCAGTCTGTTCGTGCTGTATTCGGCCAGCGGCAAGAGTTGGGATTTGCTGATCAAGCAAGCCACTTCGTTCGGCATCGGCCTGGTGTCGA TGATCGTCATCGCCCAGCTCGAGCCGCGCTTCATGGCGCGCTGGGTGCCGCTGGCCTATGTCGTGGGCGTGAGCCTGCTGGTGGTGGTGGACGTGATGGG CCACAACGCCATGGGCGCCACCCGCTGGATCAACATCCCCGGGGTGATTCGCTTCCAGCCTTCGGAATTCCTCAAGATCATCATGCCGGCGACCATCGCC TGGTACCTGTCCAAGCGCACCTTGCCGCCGCAGCTCAAGCATGTGTGCATCAGCCTGTTGCTGATCGGCATCCCGTTCATCCTGATCGTGCGCCAGCCGG
|
|
| Amino Acid Sequence |
>penicillin-binding protein 2
MPQPIRIKDHEKDARLVRGRVVFGAITVVTLIGVLIARLYFLQVIQYEYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWQQ VLDVIVEVLQLTPEDRAIFEKRMRQGRRPFEPVPILFELTEEQIALIAVNQFRLPGVEVVAQLVRHYPQGPHFAHSVGYMGRINEKELKTLDPVNYSGTH HIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPNTGEVLAMVSQPSFDPNLFVTGISF RAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVTASSRVFDPGYYQLPNYDHKYRNWNRTGDGYVDLETAIMRSNDTYFYDLAHKLGIDR LSSYLGKFGIGQKVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALVASKGKWYRPHLAKTIEGQKPVDPDPMPDIIL RNPSDWQKVNNGMQQVMHGARGTARKAAIGSPYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPADNPKIVVAVMVENGESGSGVAAPVVR QVMDAWLLDEHGQLKPEYASPTTAEATAREE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|