Pseudomonas fluorescens Q2-87, PflQ2_4019
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCTAGCCGCGACAAGCTGTTCGTCCAGGAAGGCCGCAAAGTGTTCCGCGACGTCTGCCCGATGGTGGCCGAATTGATCGGTGCCCACTTGGAAGAAA ACCAACTGAGCGTCGGCGAAGTGAAGCGCTTCTGGCTGCACCAGGCCAACCTGAGCATGAACCACCTGATCGTGCGCAAGCTGCTCGGCCGCGAAGCCAC TGAAGAGGAAGCACCGGTGATTCTCGACCGTTATGCCAACACCAGTTCGGCTGGTTCGGTGATTGCGTTTCACAAATACCAGGACGACCTGCCCAGCGGC GCTGTGGCGGTGCTCAGCTCGTTCGGCGCTGGTTATTCGATTGGTAGCGTGATCCTGCGCAAGCGTTGATCGATCGCTTTTGTGGCGAGGGAGCTTGCTC CCGCTGGGCTGCGAAGCGGCCCCAAGATTTTGCGGCTGCTACGCAACCGAGCGGGAGCAAGCTCCCTCGCCACATAACATCGCCAGGCAACGGGTTTTGT
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| DNA Sequence for Gene |
>PflQ2_4019
ATGACGGTCACCACTGACACCCAACTGCTCACACGCCTGCTGGCCGGCGAGCAACAGGCCTACAGGGAACTGGTCAGCACCTACCAGGGCGCTATGCGCG CGGTAGCCTATGCCATCGTCGGTAGCCGCCATGCCGACGAAGTGGTGCAGGACGCTTGGCTGTCGGTGGTGCGCAACCTCAATGGCTTCCAGGGACGTTC CAGCCTCAAGACGTGGTTGTTGACCATCACGGCCAACGCTGCCAAAGGGCGTTACAAACAAAACCGTCGGGAAGTGCCGCTCAATGATCTTCCGTCACCC CACGGTACCCTGGGCGATGATCGTTTCGCCGCCGACGGCCACTGGCTCCAGGCGCCGTTCGCCTGGCACCAGGACACGCCGGAAGCACTGTTGACGATGG ACGAACTCCGCGATTGCCTTGAACATACTTTGCTCAGCCTCTCGGAACTGCAAGGCAGCGTGCTGACGCTGCGTGAACGCCAGGGCTTGGAGCCGGAAGA GATTTGTAATCTACTCGACATCTCGCTCTCCAACGTACGCGTGCTGCTGCATCGCGCCCGACTGAAGGTCTTCGCGACCGTGGAACATTTCGAGGAGACC GGCGAATGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGCAAGGAACAAGTCGCGCGCTCCAGCGATTATCTCGACGGCCAACTGAGTTTCCGTGAGCGCCTGATGGTGCGCCACCACCTGATGTTCTGCCCCAA CTGCCGGCGGTTTATCCGCCAGATGCGCCTGATGCAGGCGACCCTCAAAAAGCTGCCTGAAGCCCCGATTCCCAACCTGGATCACCTTGCCGAAAAACTC GCGGCTGAACGTAAGCGTCACCACTCATAGTTCCTGTAACCACCCCGACTGCTCTAACTTGCCCCTTGCAGCTCACCCCTTGCCGCTGCTTCTCAGTTAT TTCCATTCGAAGTAAAAAGTTCCACTGTCATAAAATCTTTATCTGATGGCAACTTGCCTGACATCACCCATCGCCAAGATCCCCTCCCAACACCAGCGGG CCCAGTTCCGCGTGTTTTCTAACGCATAGACTACCAACAGGGGAATTCTTCGATGATCCGTAAGCACTTCGCAGGTGTTGCCGCCAGCGCACTGGCAATG
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| Amino Acid Sequence |
>RNA polymerase subunit sigma-24
MTVTTDTQLLTRLLAGEQQAYRELVSTYQGAMRAVAYAIVGSRHADEVVQDAWLSVVRNLNGFQGRSSLKTWLLTITANAAKGRYKQNRREVPLNDLPSP HGTLGDDRFAADGHWLQAPFAWHQDTPEALLTMDELRDCLEHTLLSLSELQGSVLTLRERQGLEPEEICNLLDISLSNVRVLLHRARLKVFATVEHFEET GEC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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