Pseudomonas fluorescens Q2-87, PflQ2_3818

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 184 493 4.71E-79
SMART SM00304 HAMP_11 IPR003660 HAMP domain 163 216 2.3E-8
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 231 492 5.5E-73
Gene3D G3DSA:1.10.287.950 - - - 165 493 1.9E-74
CDD cd11386 MCP_signal - - 258 453 1.34256E-54
CDD cd06225 HAMP - - 169 209 3.32858E-7
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 163 493 2.0E-95
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 74 492 3.8E-106
Pfam PF00672 HAMP domain IPR003660 HAMP domain 160 208 5.4E-9
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 306 460 4.8E-43
SMART SM00304 HAMP_11 IPR003660 HAMP domain 223 276 110.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.