Pseudomonas fluorescens Q2-87, PflQ2_3674 (ligA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGCAGAACATCCTGGAAAGCGGCCTGCGTTTCGGCGAAATGGACATTTTCCACCGTCACGAAAGCATGGCCGGCAATGGCGAGGTGCTGTTTTCCAT GGCCAATGCCGTGAAGCCTGGTGTGTTCGACCTGGACGACATCGATCATTTCAGCACGCCGGCGGTGAGCTTCTTCCTCGGCCTGCCAGGCCCGCGTCAT CCCAAGCAGGCTTTTGATGTGATGGTGGCCGCGGCGCGCAAGCTGTCCCAGGAGCTCAACGGCGAACTGAAGGACGACCAGCGCAGCGTGCTGACTGCCC AGACTATCGAGCATTACCGCCAGCGCATCGTCGAATTCGAGCGCCGGGCGCTGACCCAGAAGCGCTGATCGATGCACGGCTCTCGCGGTCAGAGAGCTTT ATGTGGCGAGGGAGCTTGCTCCCGCCGGGGTGCAAAGCACCCCATGAATCAAGAAAATCGAGCAGCCTAGGCTGCTCTTTTGCTTTATGAGAGAACACCC
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| DNA Sequence for Gene |
>PflQ2_3674
|ligA
ATGAACGCCGTCGAAACCCGTATCCAACAGCTACGCACCGAGTTGGATGAGCACAACTACCGCTACCACGTCCTCGACGAGCCAAGCATTCCGGACGCCG AGTACGACCGCCTGTTCCATGAACTCAAGGCGTTGGAAGAGCAGCACCCGGATCTGGTGACCAGTGATTCGCCGACTCAGCGGGTCGGCAGCGTGGCCTT GTCGGCGTTCAGCCAGGTGCGTCACGAAATCCCGATGCTCAGCCTGGGCAACGCCTTCGACGAAACGACCATGCGCGAATTCGACCGCCGGGTAACCGAA GGCCTCGACCTGCCCATGGGGGATCTATTGGGCGGCGGTGCGGCGGTGGAATACAGTTGCGAACCCAAGCTCGATGGCTTGGCGGTCAGCCTGTTGTATC AGGACGGCATGCTGGTGCGCGGAGCCACCCGTGGTGACGGCACTACCGGCGAAGACATCAGCGTCAACGTGCGCACCGTGCGCAACATTCCCCTCAAGTT GCAGGGCAACGGCTGGCCGCCGCTGTTGGAAGTGCGCGGCGAGGTGTACATGTCCAAGGCCGGCTTCGAGCGCCTCAACGCCACGCAGCTGGAGGCGGGG GGCAAGACCTTCGCCAACCCGCGCAACGCCGCGGCGGGCAGCCTGCGCCAGCTGGACTCGCGCATCACCGCCAACCGTCCCCTGGAATTCTGCTGCTATG GCATCGGCCAGGTCACCTCGGATATTGCCGACACGCATATTGGCAATCTCAAGCAGCTCAAGGCTTGGGGCATGCCCATCAGCCGTGAACTGAAGCTGGC CCACGGCATTGACGAGTGCCTGGACTACTATCGTGACATCGGCGAGCGGCGCAACGCGTTGCCTTATGAAATCGACGGTGTGGTGTTCAAGGTCAACAGC ATCGCCTCCCAGCGCGAACTCGGTTTTCGCGCCCGGGAGCCGCGCTGGGCCATTGCCCACAAATTCCCGGCCACCGAGGAGCTCACCGAGTTGCTGGACG TCGAGTTCCAGGTCGGACGCACTGGTGCGGTGACGCCGGTCGCGCGCCTCAAGCCGGTGAAAGTCGCCGGTGTGACGGTGGCCAACGCGACGTTGCACAA CATGGACGAGGTGGCGCGGCTTGGCTTGATGATCGGCGATACCGTGATTATCCGGCGTGCCGGTGATGTGATCCCGCAAGTGGTGCAAGTCATCACCGAG CGCCGCCCGGACGATGCCCGCCCGGTGGAGGTTCCCAAGCAATGTCCGGTCTGCGGCTCCCACGTCGAGCGCACGCAGTTGATCAAGCGCAGCAAGGGCC GCGAAACCATCAGCGAAGGCGCGGTGTACCGCTGCGTCGGCCGCTTGGCCTGCGGGGCCCAGCTCAAGCAGGCGATCATTCATTTCGTGTCGCGCCGGGC GATGGACATCGAGGGCCTGGGCGAGAAAAGCGTCGAGCAATTGGTGGATGAAGGCCTGGTGGGCTCGCCCGCCGATTTGTATGCCCTGACTTTCGAACAG GTGGTCGACCTGGAAGGGTTCGCCGAGTTGTCGAGCAAGAATCTGCTGGCAGCCATCGACGACAGCAAAAAGCCGAGCCTGGCGCGCTTCATCTATGCCC TCGGGATTCCTGACGTGGGCGAGGAGACCGCCAAGGTGCTTGCCCGTTCCCTCGGCTCGCTGGAGCGCGTGCAGGCGGCCTTGCCCCAGGTGCTCACATA CTTGCCGGACGTTGGCCTGGAAGTGGCCCACGAGATCCACAGCTTCTTCGAAGATTCGCATAACCGCCTGGTGATCAAGGATCTGTTGCGCCATGGCATG GATATCCAGGACCAAGGCGAGTTGGGTGCCGAGTTTTCTGCCAGCACCACGCTGGGTGGCTTTCTCGACAAGCTGCATATCCCGTCGGTCGGGCCGGGTG GGGCGCAGAAACTGGCGGACAAGTTCGGCTCCCTCGAAGCGGTGATGAATGCCGATTGGCTGGACATGCGCCAGGCATTGCCGGAAAAGCAGGCCAACGC CGTGCGCGAGTTCTTCGCCATCGACGCCAATCGCCAGCAGGCCGAGGCGGCGGAACAACAGCTGCGCGACTTTGGCATGCACTGGCAGAGCGAGAAAAAA GTGGTCGAAGGCTTGCCTGAGGCGGGGCATACCTGGGTGTTGACCGGCTCGCTGGAACTGATGAGCCGCGACATCGCCAAGGACAAGCTGGAAAGCCTGG GGGCCAAGGTGGCCGGCTCGGTGTCGGCGAAAACCCACTGCGTGGTGGCTGGGCCAGGCGCGGGCTCGAAGTTGGCCAAGGCGAATGAGTTGGGGGTGAA GGTGCTGGATGAGGAAGCGTTTGTCGGTTTCCTGGGTCAGCACGGGATCACGGTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGTGTGGCGAGGGAGTTTGCTCCCGCTCGGCGGCGCAGCCGTCGTAAAAACCGTCTGACGCGACGCGGAACGATCAGGACGTGGCGATGATCTAGTCTT GCAGGCTCCAGGGAGAGACCGCCATGTACCGCTTCTTCGAACAACTGAGCTCACGCATCGCCGCACCTTTCATGGGCGACCGCTCACGCAACAGCAAGAT ATGGCCGTGTCGCTGCGGCCAGTCGCTGTTTTTCCGCAATAGCCAATGCCTGGCCTGCCTGGCGGCGCTGGGCTATCAGCCTGAGCAGAGTCGCCTGTCG TCCTTGCAACCCGGCGAACGATCCGACACGTGGACCCTGGACGCCGACCCGCAAGCCGGGCTGTTTCGCCGCTGCGCCAATCTCGACACGGCGGCGTCAT GCAACTGGCTGCTGCCGGACAACGGGCGCGACACCTTGTGTATCGCCTGTAGCCTGAATCGGACCATTCCAGACCTGTCGATCCCGGAGAACCCTGAGCG
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MNAVETRIQQLRTELDEHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPDLVTSDSPTQRVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTE GLDLPMGDLLGGGAAVEYSCEPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGNGWPPLLEVRGEVYMSKAGFERLNATQLEAG GKTFANPRNAAAGSLRQLDSRITANRPLEFCCYGIGQVTSDIADTHIGNLKQLKAWGMPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNS IASQRELGFRAREPRWAIAHKFPATEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITE RRPDDARPVEVPKQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQLVDEGLVGSPADLYALTFEQ VVDLEGFAELSSKNLLAAIDDSKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDSHNRLVIKDLLRHGM DIQDQGELGAEFSASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQALPEKQANAVREFFAIDANRQQAEAAEQQLRDFGMHWQSEKK VVEGLPEAGHTWVLTGSLELMSRDIAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEEAFVGFLGQHGITV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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