Pseudomonas fluorescens Q2-87, PflQ2_3094 (nirS)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCCGCCCTCGCGCACCGCCCGGGTCAAGGGCCCGTCCTGCCACCAAGTACCCTGGGCACCGATCAGGTGCCGACCCACCAGGTCGGCGGCGCTCAAAT CATCGTGGCAGGCCACGGTGTACAGCGGCAATTTCAAGCGGTGGGCCATGTGCTGGACAAAACGGGTCTTGCCGCAGCCGGTCGGGCCTTTGATCAGCAC CGGCATGCCGTGATGCCAGGCCTGTTCGAACATCGCCTGTTCATTGTCCTGGGGTTGATAAAAGGGTTCGTCCGGATGCTGCAAGGAGTGGATAGCGTTC ATGGCAAGGCCCGATCAGACAACACGATTGGCGGTCAAGCTACGGCGCCCTGCGACAACCTGGCAAGGGCGGCGGCCGGCAAACTTGATCGCCGTCAAGC GGCTAACCACAGGCCTGGGCATAGCCTTGCACCGCACCAAGAACCTGCGCGCCGAACACCAATTAAAGCGCAGCGCGGATCACGCCTGAGGAGAAATGGA
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| DNA Sequence for Gene |
>PflQ2_3094
|nirS
ATGCTGATCAGCCACAAAAAATCGTGGACCTTGAGGGTCGCGGCGCTGTGTACAGCGCTGGCCGCACCCTACGCTTTCGCCGACAAAACCCATGAGCCAG AACACTCGCGCATGGTCAAAACCGAAGGCGCGCCGGACCTGAGCCAGGCCGACTTCGACGCGGCAAAGGAAATCTACTTCCAGCGCTGCGCGGGTTGCCA TGGTGTATTGCGCAAGGGCGCCACCGGTAAACCGCTGACCCCCGACATCACCCAGAGTCGCGGCCAGGCCTATCTCGAAGCACTGATCACCTACGGTTCC GCCGCCGGAATGCCGAACTGGGGCACCTCCAACGCCCTGACCAAAGACCAGATCACGGTGATGGCCAAGTTCATCCAGCACACCCCGCCGACGCCGCCGG AATGGGGCATGGCCGAAACCCTCAAGACCTGGAAAGTCTTGGTCAAGCCCGAGGACCGGCCGACCAAGCAGCTCAACACCCTCAACCTGCAAAACCTGTT CTCGGTGACCCTGCGCGACGACGGCAAGATTGCCCTGATCGATGGCGACAGCAAGAAGATCGTCAAGCTGATCGACACCGGTTACGCCGTGCACATCTCG CGCATCTCCGCGTCGGGACGCTACCTTCTGGTGATCGGTCGGGACGCCAAGATCGACATGATCGACCTGTGGCCCAAAGAGCCGACCAAGGTCGCCGAAA TCAAGGTAGGCATCGAAGCCCGTTCGGTGGAGACGTCAAAATTCAAGGGCTACGAAGACAAGTACACCATCGCCGGTTCGTACTGGCCGCCGCAGTTCAC CATCATGGACGGCGAAACCCTGGAGCCCAAGCAGATCGTCTCGACCCGCGGCATGACCGTCGACACCCAGCAGTACCATCCCGAGCCTCGCGTCGCGGCA ATCATCGCCTCCCACGAATGGCCGGAATTCATCGTCAACGTCAAGGAAACCGGCAAGGTGATGCTGGTCAATTACCAGGACATCAAGAACCTCACCATCA CCAATATCGACGCCGCGCCATTCCTGCATGACGGCGGTTGGGACAGCAGCCATCGCTACTTCATGACGGCGGCCAACAACTCCAACAAAGTCGCGGTGAT CGACTCCAAGGAACGCAAGCTCACCGCCCTGGTGGACGTTGGCAAGACCCCGCACCCGGGGCGCGGTGCCAACTTCAACCATCCGCTCTACGGGCCCGTC TGGGCCACCAGCCACTTGGGTGACGCCGGGGTTTCGCTGATCGGCACCGACCCGGTCAATCATCCGCAATACGCCTGGAAGCAGGTTGGCACGCTCCAGG GCCAGGGCGGCGGCTCACTGTTCATCAAGACTCACCCTCAATCCCGACACTTGTATGTCGACACCACCCTCAGCCCCGATGCCAAGCTCAGCCAATCAGT GGCGGTGTTCGACATCGACAAGCTCGACGCCGGCTACACCGTGCTGCCGATTGCCGAATACGCGGGAATCAAGAAAGGCGCGATGCGCGTGGTGCAGCCG GAATACAACAAGGCCGGCGATGAGGTCTGGTTCTCGGTCTGGAGTGGCCAGGAAGACGAGTCGGCGCTGGTGGTGATCGACGACAAGACCCTCAAGGTGA AGAACGTGATCAAGGACAAACGCCTGATCACCCCGACCGGAAAATTCAACGTTTACAACACCCAACACGACATCTATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCATCAATAAGAGGAAAAACCATGAAGCCTATTCTGATCGCCTTGGCCCTGACGGCTGCCTACAGCCTACCGGCGCTGGCACAAGACGGCCCGACGC TGTTCAAGAGCAAGCCCTGCGCGGCCTGTCACTCCATCGATACCAAGGTCGTTGGCCCGGCGCTCAAGGACGTCGCGGCGAAAAACGCCAGTGTCCCTGG TGCACAGGATTTACTCGCCAAGCACATCAAGGAAGGTACGCAAGGCAACTGGGGTCCGATGCCGATGCCGGCCAACCCCGTGACGGAAGAAGAAGCCAAG ATCCTCGCGGCGTGGGTCTTGACCCTTAAATAAACCCAGGCAGGACCTGCCTGACACAAACCCCGTGGCGAGGGAGCTTGCTCCCGCTGGGCTGCGCAGC AGCCCCCTGGTTTTGCCTGACACACTGAGTCGTCAGGTTGCTATTGGGACTGCTTCGCAGCCCAGCGGGAGCAAGCTCCCTCGCCACAGGACCGCGCAGC
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| Amino Acid Sequence |
>nitrite reductase
MLISHKKSWTLRVAALCTALAAPYAFADKTHEPEHSRMVKTEGAPDLSQADFDAAKEIYFQRCAGCHGVLRKGATGKPLTPDITQSRGQAYLEALITYGS AAGMPNWGTSNALTKDQITVMAKFIQHTPPTPPEWGMAETLKTWKVLVKPEDRPTKQLNTLNLQNLFSVTLRDDGKIALIDGDSKKIVKLIDTGYAVHIS RISASGRYLLVIGRDAKIDMIDLWPKEPTKVAEIKVGIEARSVETSKFKGYEDKYTIAGSYWPPQFTIMDGETLEPKQIVSTRGMTVDTQQYHPEPRVAA IIASHEWPEFIVNVKETGKVMLVNYQDIKNLTITNIDAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKERKLTALVDVGKTPHPGRGANFNHPLYGPV WATSHLGDAGVSLIGTDPVNHPQYAWKQVGTLQGQGGGSLFIKTHPQSRHLYVDTTLSPDAKLSQSVAVFDIDKLDAGYTVLPIAEYAGIKKGAMRVVQP EYNKAGDEVWFSVWSGQEDESALVVIDDKTLKVKNVIKDKRLITPTGKFNVYNTQHDIY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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