Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCGCGTACGCCCAGGAAACGGTTCTCGTCATCAGCCTTGAGCAAGGCATCGATGACTTTGAGGCGAATCAGGCTGGTACGCAGCCCGAAACTTTTGAGCA GTCGACGGATGTGTTCATTGCCGCCTCGCTCTGCGGGCCTGGCAAACACAACGTTGGTGGCGGTCTGCCTTGGCTTGCCCTCCATGGGCAGTTGCGCGTT ACGCATGTAAAGACTCCTTACCAGCCTGATCAGAAAAGGTCACGGATACTCTCCTGTTATAGGACGAACGAGGGTGAGCAATATGAAGGCCCCGATGTGA AAAAATGCCCTGGCTTCGTCAAACCCACGTGGTCGAAGGGTCGGCAGGCCATTAATTTTTTTCATCCGGTTCGTTTGAAGGGGAGGCACATTGCGCTTCG GCGCGCGGCGTGTGCATGCCCAGGCGGGCCGACTGTGGTCGATTGATCGCAGCGGCAACCGTGCTGGTTTTTCAAATTGGCAGCAGGAGTGAGTGCAAGA
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DNA Sequence for Gene |
>PflQ2_2681
|pvdQ
ATGTCCGGGCAGTTATCGAGGGTTGGCCTTGCAGGCGTGTTTTTGGGGATGGCCTTGGGCGCCAGCCCCGCAGTCAACGCGCGTAGCGATGTACCGCAGG CCAGTGCCGAAATCCGGCGCACCAGTTTTGGCGTCCCGCATATCCGCGCGCAGGACGAACGCGGGCTGGGCTACGGCATCGGCTATGCCTACGCGCAGGA TAACCTTTGCCTGCTGGCCAATGAGATTGTCACGGTCAACGCCCAGCGCTCCCGCTATTTCGGTCCCGCACAGGTTACGGTGGAGCAGCGGGAGAACCGC GTCAGCGATCTGTTTTTCAGCTGGCTCAACACACCGCAAGCCGTATCCGCTTTCTGGCAAGCCCAGACGCCCCAGGTGCAGCAATTGCTCGAAGGTTATG TTGTGGGCTACAACCGAGCGCTGGCCGAGCGCCAGGCCAAAGGCCTGCCCGAGCAATGTGCCAGCGAGTGGGTGCGGCCCATCACGGCGTTCGATCTGGT CAAGTTGACCCGCCGCCTGCTGGTCGAAGGCGGCATCGGCCAGTTCGCCGAAGCCCTGGCCGGCGCGCAGCCGCCTCAAGCAACAGCGCTCGTGGGCCAC ACGGCGTCCGGTTTTGCCACCGCCGACGCCCGCCAGCAGCGTTTTGCGCTTGAGCGCGGCAGCAATGCGCTGGCCATCGGCAGCGAGCGTTCGGCCAACG GGCGCGGAATGTTGCTGGCGAACCCGCATTTCCCCTGGCTGGGTGGCATGCGCTTTTATCAGATGCACCTGACCATCCCCGGCAAGCTGGACGTGATGGG CGCGGCCTTGCCGGGCCTACCGGTGATCAACATCGGTTTCAGCCGCCACCTGGCCTGGACCCATACCGTCGATACATCGAAACATTTCACCCTGTACCGC CTGCAACTCGACCCGAAAGACCCGACCCGCTACCTCATCGATGGCAAGTCGGTGCCCATGAGCCAACAGACCGTCGCCGTCGAGGTCAAGCAAGCCGACG GCCAACTGAAGACGGTGTCCCGAGTGGTCTACGGCTCGCGGTTCGGCCCGATCGTGCAATGGCCGGGCCGACTGGACTGGGACAACCGGTTCGCCTATAG CCTGCGCGACGCAAACCTGGAGAACGACCGTGTGTTGGCTCAGTGGTACGCGATGAATCGGGCCGTCACGCTCGCCGATCTTCAGGGCGCCGTGCACAAG ATCCAGGGAATTCCGTGGGTCAATACCCTGGCGGTGGATGACCAAGGGCAGAGCCTTTATATGAACCTTTCGGTCGTGCCAAACGTGGGCGCCGACAAAC TGGCCCGGTGCAGCGATCCCAGGGCCGGGCTGCGACTGATCGTGCTGGATGGCTCACGCAGCGAATGCGCGTGGGACATCGATGCGAAAGCCGCGCAAAA AGGCATTTTTGCGGCCGACAAGTTGCCGCAGTTGCTGCGCCGCGATTATGTGCAGAACTCCAATGATTCGGCCTGGATGGTCAACCCGTCCCAACCTTTG TCCGGTTATTCGCCAGTGATCAGCCAGCAGGATCTGCCGCTGGGCTTGCGGGCGCGTTTTGCGCTCGACCGGCTGGGTCAGCTCGCCAAGGGCGGGCCAG TGAAAGTGGACGACTTGCAGCGCATGGTCATGGACGATCAGGTCTACCTCGCCGATCAGGTCATGCCCGACCTGCTGGGCTTTTGCGCCGGCGACCTGGG GCCGGATGCCTCGGTGTTGGGCGAGGCATGTGGGCGCCTCGAGGCCTGGGATCGCACGGCTGGCCTGGATAGCGGATTGGGCTTCATTCACTTCCAGCAG GTCATGGCGCGGTTGCAGGCTGCACCCGATATATGGCGTGTCCCGTTCGACCCCAAGGATCCGCAACATACCCCGCGTGGCCTGGCGATCGATCGGCCAT CGGTGCTGAAGGCGTTGCGCGAAGCCATGTTGGCCTCAGTGGAGGCGGTCAACAAAATGGGCTTGCAGAATAATAGCCAATGGCGGGACGTCCAGGTCAC CAGCAGCGGTGACCGGCAAACACCGATCCACGGCGGACCGGGTGAGCTGGGGATCTACAACGCGATCCAGAGTGTGCCGGGGGCGAGCGGCAAACGCGAA GTGATCAGCGGTACCAGCTACCTGCAAGTGGTGACGTTCGACGGCGAGGGGCCACAAGCCCAGGGCCTACTGGCATTTTCGATCTCCAGCGACCCCGCAT CGCCTTATTCGGCTGACCAGACTCGGGCATTCTCACAAAAGCAATGGAGTGTGCTGCCCTTCACTGAGCAACAGATCAAGGCCGATCCACACTATCAGGC GCTGATCATCCGTGAGCTCGATGAAGTGGGCAAGGTGGCCAGGCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTCGTCAGGCAATAACCCTGGGTGTGTTGTGCAAAAGCCGCGTCCAACAGGGCACGGCTTTTTTCTTAAGGATTGGTTGGCCGCTGGCCGATGGCATTGA GGACCGGGTTGCCGTCCTTGTTCTGCGTCAGGTAGACCGGCAACACTTTGGGCAAGGAGGGCACCAGGTTGTGCACTTCGCTGAGGTTGTAGATCCCACC GATACGCAAGGTGCCGGTGCTGTTGTCAGCCAGCATGACCGGACGTTCGAGGTAGCGGTTGATCAGCGGCAACGCGTCGCTCAGGGCAAGGTCATTGAGC ACCAGCTTGCCGTTGCGCCATGCCAACGCACTGTCATTGGGGTCGGTCGGGCGGATCTGCGGTTGGGCGTCGCCGGCCTTGTAGCTGGCCTGCATACCGG GCGAAAGCGTCGAGCCGGTGCTGGCCAGTGCCAAGTTGCTGGCAACTTTTACGGAGCCTTCCACCAACGTGACCCGTACTTGGTCCTGATACAACCAGAC
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Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MSGQLSRVGLAGVFLGMALGASPAVNARSDVPQASAEIRRTSFGVPHIRAQDERGLGYGIGYAYAQDNLCLLANEIVTVNAQRSRYFGPAQVTVEQRENR VSDLFFSWLNTPQAVSAFWQAQTPQVQQLLEGYVVGYNRALAERQAKGLPEQCASEWVRPITAFDLVKLTRRLLVEGGIGQFAEALAGAQPPQATALVGH TASGFATADARQQRFALERGSNALAIGSERSANGRGMLLANPHFPWLGGMRFYQMHLTIPGKLDVMGAALPGLPVINIGFSRHLAWTHTVDTSKHFTLYR LQLDPKDPTRYLIDGKSVPMSQQTVAVEVKQADGQLKTVSRVVYGSRFGPIVQWPGRLDWDNRFAYSLRDANLENDRVLAQWYAMNRAVTLADLQGAVHK IQGIPWVNTLAVDDQGQSLYMNLSVVPNVGADKLARCSDPRAGLRLIVLDGSRSECAWDIDAKAAQKGIFAADKLPQLLRRDYVQNSNDSAWMVNPSQPL SGYSPVISQQDLPLGLRARFALDRLGQLAKGGPVKVDDLQRMVMDDQVYLADQVMPDLLGFCAGDLGPDASVLGEACGRLEAWDRTAGLDSGLGFIHFQQ VMARLQAAPDIWRVPFDPKDPQHTPRGLAIDRPSVLKALREAMLASVEAVNKMGLQNNSQWRDVQVTSSGDRQTPIHGGPGELGIYNAIQSVPGASGKRE VISGTSYLQVVTFDGEGPQAQGLLAFSISSDPASPYSADQTRAFSQKQWSVLPFTEQQIKADPHYQALIIRELDEVGKVARQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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