Pseudomonas fluorescens Q2-87, PflQ2_2627
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGGCGCCTTGGGTCTGGATCGTTTCCCAGGAAGACTGGCAGGGCGCACTCAAGGAAGTGTCCAGCTACATCCCCCAGGGTCATTCATTGGTCCTGCTGC GTCCGCAGATCGACGACCTGCTGGATGATCATCGCGATGTCTTGCAAGGCCTGAATGCTGACGCCCGGATGCTCATCGCGCCGCAGACCGCCATGCATAT CCTCTTGCTGCAACTGCTCTATTCAGTGCCCAGCGAGCAGCAACTCTACGAACAACTCAACTACAACCTGCTGTTCCGCTGGTTCGTCGGCCTGGACCTG AATCAGAAGGTCTGGAGCTTCAACGTCCTGAGCAAAGACCTCGCGACGCTGCTGGGCGATGCGCGGGCGGTGCAGCTCATCCAGAAAGTCATCGGCGAAG TGTTTTGTGGTGCCTTGCTGCAAATGCCGGAGTTCTCCTTGAATTTCGCGCTGCTGCATACCTGGCTGGCCCGGCACGCCACGACATCGACGGCCAGCAA
|
|
| DNA Sequence for Gene |
>PflQ2_2627
TTGAGCCGAATTTTGAATCCAGGGGGTGGTGTGGAGCATTTCTTCAAATTATGGCCGGCGCTGTGGGGCTGGCTGCTGCTGGCGGTTGGGGGGCCGACGG CATGGGCAGCCGAAGAAGGGGCGCAGGCCGAGACGGCACCGGCGCGCCTGGTGGACGTGAACGAGTATTTCGTGCGTGGCAACACCGTGCTCGATGCCCG GGCTATCGAGGAAGCGGTCTACCCGTACCTCGGTCCGCAAAAGACGCTGGACGACATCGAAGGGGCGCGCGAAGCGCTGCAAAAGGTCTACCAGGCCCGG GGCTATCAATCGGTGTTCGTTGAGCTGCCGGAACAGAAAGTCGAGGACGGCATCGTTTACCTGCAAGTCAGCGAGACCAAAGTCGGCCGGGTGCGGGTGG TGGGCGCCAAGCATTATTCCCCTGTCGAAATCCGTGATGACGTGCCGGCGCTCAAGGAAGGTGCGGTGCCTGATTTCGCCCAGGTCCAGGCCGAACTGGC GCAACTGAACAAGACGCCCGGGCGCCAGGTGATGCCGCTGGTGCGTGAAGGGCAGCGCCCCGGGACCATGGATGTGGACTTGCAGGTCGAAGACCAGGAC CCCTGGCAAGCGAGCCTGGGGCTGAACAACGACTACAGTGCCGATACCGAAAAGCTGCGCACCGTCGCCAGTCTTGGCTACAACAATCTCTGGCAACTGG GCCACAGCATTTCGCTGACGTTCTTCACCGCGCCCCAAGACACCGAAAATGCCAAGGTCTGGTCGGGTGCGTACACCGCGCCCTTGAATGAACGCTGGAG TGTGCAGTTCTCTGGTTATCAGTCCGACAGCAACGTGGCGACGGTCGGCGGCAGCAACGTATTGGGCAAAGGCCACTCCTACGGGGTTTCGGCGATCTAC AGCCTGCCGTCCAGCGCCGCTTGGGCCAATACGTTTTCCGTCGGCGTGGACTTCAAGGATTTCGAAGAGGAACTGAGCCTGGGCGGCGCAAGCGACAAGG CTCCGCTCAAATACGCACCGTTCACCTTCGCCTATAACGGGCTTCGCTACACCCAAAGCAGCCAACTGGGCCTCGGCCTGAGCTTGGTGGCCGGCACACG GAGCCTGTTGGGTTATGGCAGCTCCGACGAAGAATTCGACTATAAGCGTTACCGCGCCAGCCCCAGCTTTGCGGTGCTCAAGGGCGACGGCAGCTACACC TTTACCTTCGCCAACGACTGGCAGACCGCATCCAAGGCCGCCTTCCAGCTGGCATCGGGCCCCCTGGTTTCCAACGAACAGTTCTCCTCCGGTGGCGCCA CCTCGGTGCGCGGTTACCTGGCCGCCGAGCGCACCGGGGACGACGGCTACCTGCTGTCTCAGGAGTTGCGCACACCGTCCCTCGCCAAGTTCCTTGGCAG CCATGTCCAGGAGTGGCGCTTCTATGCCTTCGCCGAAGGCGCGCAGCTTTACCTGCGCGACGAATTGCCCGACCAGGAAGCCGATTACAGCCTGGCCAGT GTCGGCCTCGGCACCCGAGCGAGCCTGAGCAAGTGGATGTCCGGCAGCCTCGATTGGGGCTATCCGCTGCTCGACGGGCCGAACACCTCGAAACAGGAAT CGCGCCTGCACTTCAACCTGCAAGCGACGTTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCCAGGAGTCATGTCCATGCAACGCTTATTGTTTTCCCTGTTGATCTGCCTGGGGCTGGTGCTTCCGGCGACCGCCAATGCCTGGTGGCAGGACGATTG GCATTACCGCAAACAGATTTCGGTGGACACCACGCCCCAGGGCGCCGCCATCGCCCAAGCCCTGGGCCGCACGGCACTGCTGGTGCGCCTGCACACCGGT AACTTCACCTTCGATGGTGTCAAGGACGACGGCTCGGACCTGCGTTTTGTCAGCGCCGACGACAAGACCGTGCTCAATCATCAGATCGAGAGTTTCGACC CGTTGATGGGCATGGCGTTGGTCTGGGTCGATGTGCCAAGTGTGGAGGGCGGACAGCGGCAGGACCTGTGGATGTATTACGGCAACCAGAAGGCACCGGC CACGGGCAGCGGTCAGTTGACGTTCGATCCGGACTACACCGCGCTGTACCACTTCGACGGCGCCACCGGCGTGCCGCCCAAGGACACCACGGCCTACGGC
|
|
| Amino Acid Sequence |
>membrane protein
MSRILNPGGGVEHFFKLWPALWGWLLLAVGGPTAWAAEEGAQAETAPARLVDVNEYFVRGNTVLDARAIEEAVYPYLGPQKTLDDIEGAREALQKVYQAR GYQSVFVELPEQKVEDGIVYLQVSETKVGRVRVVGAKHYSPVEIRDDVPALKEGAVPDFAQVQAELAQLNKTPGRQVMPLVREGQRPGTMDVDLQVEDQD PWQASLGLNNDYSADTEKLRTVASLGYNNLWQLGHSISLTFFTAPQDTENAKVWSGAYTAPLNERWSVQFSGYQSDSNVATVGGSNVLGKGHSYGVSAIY SLPSSAAWANTFSVGVDFKDFEEELSLGGASDKAPLKYAPFTFAYNGLRYTQSSQLGLGLSLVAGTRSLLGYGSSDEEFDYKRYRASPSFAVLKGDGSYT FTFANDWQTASKAAFQLASGPLVSNEQFSSGGATSVRGYLAAERTGDDGYLLSQELRTPSLAKFLGSHVQEWRFYAFAEGAQLYLRDELPDQEADYSLAS VGLGTRASLSKWMSGSLDWGYPLLDGPNTSKQESRLHFNLQATF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|