Pseudomonas fluorescens Q2-87, PflQ2_2152 (tssF3)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACCAAGGAAGGCACGGCGGGCACGACCTGGGACTTGGCGGCCAACAAAATGACCAAGTGACGGCGCGCGCCCATGGCCGGTTTCGGGCTTCGCCCGCCC CTGTTCGAACGCCTGGCCAGCCCGGCGGACGATACAGGCCGGACGTTCGATCGACAGGCGTTGCAGGACTCGGTCCATGCCGAACTGCAACGCCTGTTCA ATACCCGACGCGGCCCACGGGCGCTGACCGAGCCGCCGAGCATCCTGGATTACGGCATCGCCGACTGGACCGCGCTGCAACAGCAGCGCAGCGATGATCG TCGCCAACTGACTCGGGAAATCCGCCAGGCCGTCACCCATTTCGAACCGCGCCTGCAACTCGGCGAGGTGCAGGTCACGCCGGTGCCGGGTCATCCGCAG CAATTGTGCATACGGCTGTCGGGCGAGCTGCGCGGCGACCTGCACTCATGGCCTGTGGCATTTGTCATCGAGCACGCCGGCGACGGCCTTGAGGTACGAC
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| DNA Sequence for Gene |
>PflQ2_2152
|tssF3
ATGAGCGACTCGATTGACCCGCAACTGCTCGATTATTACCAGCGTGAACTGACTTGGCTGCGGCACGCCGGTAGCCTGTTCGCCGAACGTTACCCCAAGG TCGCCCGGCGCCTGGAGCTATCCCCCGGCGAATGCCCCGACCCGCACGTCGAGCGCCTGCTGGAAGGCTTCGCGCTGTTGGCCGCGCGCCTGCAACGCAG GCTCGACGACGATTACGCCGAGTTCAGCGACGCCCTGCTCGAACAGCTTTACCCATTGGCCATGCGCCCGCTGCCATCGTGCGCAATCGTGCAGTTCGAA CCCGACCCGAGCAAAGGCAACCTCAACGAGGGCTACCCGCTGCCTCGGGACACACCGTTGTTCGTCACCACCGACACGGGCCAGAGCATTCATTTCCGCA CCACGGCCGCCGTGCACCTGTGGCCGATTGAAGTCAGCGAAGCGTTGCTGCTGGGCAGTGACGAGGCCCAGGCGCTGACCGGCGTGGTGCAGGCGCGCTC GGCCTTGCGCCTGAACCTGCGCTGCCTGGGGGAAAGCCAATGGTCGACCCTGGGCATCGACCGCCTGCGAGTGCACCTTGCGGCCTCGCCGATGATCAAC GCCTGGCTCTACGATTTGCTGGGCGCCCATGCCATCAAAGTCCTGGCCGGCCCACCGGGCAGCGTGCCGGAACCACTGGTGGGCTTGCCGCAAATCGTCG GCTTCGGCAGTGACGAAGTCTTGTTGCCGGACGAAGACGGCGTGCATCCCGGCATGCGCTTGCTCGCGGAGTACTTTGCCTTTCCCGACAAGTTCGGCTT TTTCGACCTGCCATTGGCCGGAGCCGCCAGCGACAACCCGGCGCTGTACCTGTACATCGTTTTCGACCGGGCGCCCGCCAATCGCTTGCCGCTGCAAGCC AGCGACATCGCCCTGGGCTGCACGCCGGTGATCAACCTTTTTCCCCGGACGTCCGAGCCCCTGCGCCCGGACGGCACCCGTAGCGAATACCGGTTGGTGG CCGACAGTCACCGCGAAAACAGCGTCGAGATCCATAGCATTCGAGGCATGCGTGCGACGTCCAGCCAGGGCGTGCGCAAAGTGCCGGCCTATTACGGCAG CCAGCACGGCAGCGACCAGACCTGTTACTGGCACGCGCGTCGGGTCAGCGGCATGAGCCCCAACCGACTGGGCACCGATCTGATGGTCAGCCTGGTGGAC ACCCAGTTCGACCCGCTCGCCCAGACCCGTGACTACAGCCTGACCGCGGAACTGTTGTGCACCAATCGCCACCTTGCCCAAAGCCTGCCGGCCGGCACAC CGTTGGGCTTCGAGCGTCCGGGGCCGGTGGCCTGGGCCCGTTTGCGCAACCCTCCCAGCCCCCAGAGCCTGCCACGGCTGGACGGGGAGTCGCGCTGGCG CCTGGTGTCGCAGTTGACCCTCAACCACTTGTCGCTGGTCGAAGGTCCCCAGGCACTGGACGCGCTGCGGGAAATCCTCGAACTGCACAACCTGCGCGAC GAGGCCAGTGCCCGGCGCCAGATCGAAGGGGTGCTCGGGCTGGGCTGCGATCGGGTCATCGCCCACGTCGGCGAGGATGCCTGGCGCGGTTGGCGCAATG GCTTGGAAGTACGCCTGCAACTGGACCCGCAACACTTCGTCGGCAGCAGCGCCGTGCTGTTCTCCGGGGTGCTGGCGCAGTTCTTTTCCCTCTATGCCAC CGCCAATCGCTTCGTGCGCACCGTGCTGGTCCAGTCCGACAAGGAGGTGAAGACATGGCAACCCCAAGCCGGCAAACCCCTGACGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTGAGCCAACGACTGCGGCGCGACCCGCAACGCTTCGAATGGCTCCAGGCATTGCTGCTGTTGGAGCGCGAACATCCCCAGGCCGAACCCCTGGGCAG CGGCACCGCGCCGCACGCCGAAGCCTTGCGTCTGCGCGGACCGTTGACCCCGTTGTTCGCCGCCAGTGAAATCGAACGCCTGACCCAGGAACCCGGCTCG CCACCGATCCTGACCACGCCGATTTTCGGTCTCGGCGGTCCCGACGGACCGCTGCCCTACGCTTATCAGGAATGGCTGCAACAACGGGCGCGAGCGCGGG ATCACGCGCCGGCGGAATTTCTCGACCTGTTCCAACATCGCTTGTTGAGCCTGCTTTACAAAGTGATGCGCAAACATCGCATCGCCCTGGGCTTCACCGC GCCAGGGTCTTCGGCTGTACAGGCGCAACTGCGCGCCCTGACCGGCCTGCTGCCCAAGGCCTTGCAGGAACGCCAGGCCGCACCCGACTCCGCCGTGCTG
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| Amino Acid Sequence |
>type VI secretion system protein ImpG
MSDSIDPQLLDYYQRELTWLRHAGSLFAERYPKVARRLELSPGECPDPHVERLLEGFALLAARLQRRLDDDYAEFSDALLEQLYPLAMRPLPSCAIVQFE PDPSKGNLNEGYPLPRDTPLFVTTDTGQSIHFRTTAAVHLWPIEVSEALLLGSDEAQALTGVVQARSALRLNLRCLGESQWSTLGIDRLRVHLAASPMIN AWLYDLLGAHAIKVLAGPPGSVPEPLVGLPQIVGFGSDEVLLPDEDGVHPGMRLLAEYFAFPDKFGFFDLPLAGAASDNPALYLYIVFDRAPANRLPLQA SDIALGCTPVINLFPRTSEPLRPDGTRSEYRLVADSHRENSVEIHSIRGMRATSSQGVRKVPAYYGSQHGSDQTCYWHARRVSGMSPNRLGTDLMVSLVD TQFDPLAQTRDYSLTAELLCTNRHLAQSLPAGTPLGFERPGPVAWARLRNPPSPQSLPRLDGESRWRLVSQLTLNHLSLVEGPQALDALREILELHNLRD EASARRQIEGVLGLGCDRVIAHVGEDAWRGWRNGLEVRLQLDPQHFVGSSAVLFSGVLAQFFSLYATANRFVRTVLVQSDKEVKTWQPQAGKPLTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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