Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGGCTCGAGCTCATCCGCCGCCTGCGGTCCCAGGACAAGACATTTCCGATCCTGATACTGACCGCCCGTGGCAACTGGCAGGACAAGGTCGAAGGCCTGG CTGCCGGAGCCGATGACTATGTGGTCAAGCCGTTCCAGTTCGAAGAACTGGAAGCCCGGTTGAATGCGCTGTTGCGTCGCTCCAGCGGTTTCACCCAATC GACCATCGTCGCCGGCCCGCTGTCGCTGGACCTCAACCGCAAGCAGGCGTCCCTGGGCGAGGAACCGCTGGCGTTGACCGCCTACGAATACCGCATTCTT GAATACCTGATGCGTCACCACCAGCAGGTGGTCGCCAAGGACCGCTTGATGGAGCAGCTTTACCCCGATGACGACGAGCGCGACCCCAATGTCATCGAAG TGCTGGTCGGGCGCCTGCGCCGCAAACTCGAAGCCCCGGCCGGCTTCAAGCCGATCGATACCGTGCGTGGCCTGGGTTACCTGTTCAACGAGCGCTGCCA
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DNA Sequence for Gene |
>PflQ2_1284
|phoQ
GTGATTCGTTCGCTACGGCTGCGGTTGATGCTGGCGGCCATGACCCTGGCGGTGCTGTTCATGCTGGCGCTGCTGCCAGCCATGCAAGGCGCGTTCAGCC TGGCATTGCAGGAATCCATCGAGCAACGGCTGGCCTCGGACGTGACCACGCTGATTTCCGCCGCCCGAGTGGAAAACAATCGGTTGAAGATGCCGGAGCA ATTGCCCGATGAGCGCTTCAACCTCGCCGATGCTCGCCTGCTTGGCTATATCTATGACCGCGAGGGACGGCTGGTCTGGCGCTCGAAGGCGACTCAGGAA GAGAACATCAACTACACCCCGCGCTATGACGGCCAGGGCAACCAGTTCGCGCGTATCCGTGAAAACAACGGCCAGGAATTTTTTGTCTATGACGTCGAGA TCAAGCTGCTCGGCGGTCAGAATGCGGCGTTCAGCATCGTCACCCTGCAACCGGTTCGCGACTACGAAGTGACCCTGCAAGGGCTACGGGACAACCTTTA CCTGGGCTTCGGCGCGGCTCTGCTGGTGTTGCTGGCCCTGTTGTGGATCGGCCTGACGTGGGGCCTGCGGGCGCTGCGGCGCTTGAGCCAGGAGCTGGAT GAAATCGAAAGCGGCACCCGGGAAAGCCTCAGCACCGAGCATCCTCGGGAGCTGTTGCGCCTGACCGGTTCCCTCAACCGCCTGCTGTACAGCGAGCGCG AGCAGCGCAGCCGCTATCGTGACTCCCTCGATGACCTGGCCCACAGCCTGAAGACCCCGCTGGCGGTGCTGCAGGGTGTCAGCGAAGACATGGCCCGGCG CCCCGGGGAACGTGGGCAAGCCTGGGTGTTGCAAACCCAGATCGAACGCATGAGCCAGCAGATCGGCTACCAGCTGCAGCGCGCCAGCCTGCGCAAAAGC GGGCTGGTGCGCCATCAGGTGCGATTGCGCCCGGTGCTGCAAAGCCTGTGCGACACCTTGGACAAGGTCTATCGCGACAAACAGGTGCATGTGGTTTTCG ATCTGCCGGAACACTGCCAGGTGCCGATCGAGCAGGGCGCTTTACTGGAAATGCTTGGCAATCTGCTGGAAAACGCTTACCGGCTATGCCTGGGCGAAGT CCGCGTCAGTGTGCACCAGACCCTCGGCGGCACCGAGTTGAGCATTGAAGACGACGGGCCGGGTGTGCCGCCGGATCAGCGCGCGCGGATTCTCCAGCGT GGCGAACGGCTTGACCGCCAGCACCCGGGACAGGGCATCGGCCTGGCGGTGGTCAAGGACATCATCGAGAGCTACGGCGCCCAGTTGACCCTGGGGGATT CGGAGCTGGGCGGGGCGGCGTTTCGGATTCATTTTCCGGCGGTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CAGAAATTTTTCCGGTGCTTGCTGGCCCCTGTGGCGAGGGAGCTTGCTCCCGCTCGATTGCGCAGCAATCGCAAAAAAACGGGGCCGCTGCGCAGCCCAG CGGGAGCAAGCTCCCTCGCCACGGGCACCGGTAGATACACCGAAAAAGTTAAACGTGATGACTCAGCTCTCCCGTTCCCGATAAGCACCCGGCGTCACCC CTGTCCACTTCTTGAACGCCCGGTGGAACGCCGACGGCTCCGAGAACCCCAGTTGCTCGGCAATCTGCTGCAACGACAGGTCCGCGCGGCCCAGATGGTA GATGGCGATATCCCGCCGCAGCTGGTCCTTGAGCTCCTGGAAGCTGGTGCCTTCTTCGCGCAAATGCCGGCGCAACGTCTGCGGACTGATGTGCAAATGA GCGGCGACAGTCTCCAGGTCAGGCCAGCGATCCGTGTCGCGGCTCAACAGGCGGCGCAATTGGCTGCTCAGGCTATGGCCGTCGTCCGGGCGCGACAGCA
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Amino Acid Sequence |
>sensor histidine kinase
MIRSLRLRLMLAAMTLAVLFMLALLPAMQGAFSLALQESIEQRLASDVTTLISAARVENNRLKMPEQLPDERFNLADARLLGYIYDREGRLVWRSKATQE ENINYTPRYDGQGNQFARIRENNGQEFFVYDVEIKLLGGQNAAFSIVTLQPVRDYEVTLQGLRDNLYLGFGAALLVLLALLWIGLTWGLRALRRLSQELD EIESGTRESLSTEHPRELLRLTGSLNRLLYSEREQRSRYRDSLDDLAHSLKTPLAVLQGVSEDMARRPGERGQAWVLQTQIERMSQQIGYQLQRASLRKS GLVRHQVRLRPVLQSLCDTLDKVYRDKQVHVVFDLPEHCQVPIEQGALLEMLGNLLENAYRLCLGEVRVSVHQTLGGTELSIEDDGPGVPPDQRARILQR GERLDRQHPGQGIGLAVVKDIIESYGAQLTLGDSELGGAAFRIHFPAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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