Pseudomonas fluorescens Q2-87, PflQ2_0138 (tssF1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAAATCGCTGCCCGCGATCGCCTGCAACCGTCCCTGCTGGACCGGTTGACCGACGACGATCCAACCAATCCCAAGGAAAGCGCCGACAAACGCGTGCTAT CCCTGACCCAATTGAAAGCCTCGGTGCTGCGCGACTTGGCGTGGCTGCTCAACACCACGTCGTTGCTGGGCGCCGATGCCACGCTGCACACCCCTGCCGG TACGTCGGTGGTGAATTTCGGCCTGCCGGCGCTGGCCGGCAACAGTGCGTCGAACATCGACGTCTCAGCCCTCGAAACGCTGATTCACCAGGCCATCGCC ACGTTCGAACCGCGGATCCTGCGCCACACCCTGCGCGTGCGAGCGAGGGCCACGGCCGAAATGAACCACAACGCCTTGAGTTTCGAGATCGAAGGCGATC TCTGGGCCCAGCCCGTGCCGCTGCGCCTGATGCTGCAAACCGACCTGGACCTGGAGTCCGGGCACGTGCGCGTGGTCAACGCCGACCAGCGGAGGCGTCC
DNA Sequence for Gene
>PflQ2_0138 |tssF1
ATGAACCCGCGCCTGCTGGAGCTGTACAACCAGGAATTGCACCATGTGCGCGAAAGCGCGGCGGAGTTCGCCAAGGAATACCCGAAGATCGCCAGTCGGC TGACGTTGTCCGGCATGGACTGCGCCGACCCCTACGTCGAGCGATTACTGGAAGGCTTTGCCTATTTGACGGCGCGGGTGCAGCTCAAGCTCGACGCCGA ATACCCGACCTTCACCCACAACCTGCTGGAAATAGCCTACCCGCATTACCTGGCACCGACGCCGTCGATGACCGTGGTGCAAATGCAGGCCGATCCCGAT GAAGGCTCGCTGAGCAGTGGCTTCCCGCTGCCCCGCGACACCGTCCTGCGCGCCGCGCTGGGCCGAGAAACCCAGACCTGCTGCGAGTACCGCACCGCGC ATGCGGTGACGTTGTGGCCGTTGCAGGTCAGCCAGGCCGAGTACTTCGGCAACCCGTCCGCCGTGCTCGGGCGCCTGGCCGCCAGCGAACCGAAAGCCAA GGCCGGGCTGCGCATCACACTGCGCACCGGCGCCGAGCTGCCGTTCAACAGCCTGGCCCTGGACAATCTGCCGCTGTACTTGAGCGGCGCCGACGAGCAA CCCTTCCGCCTCTACGAACAATTGCTGGGCAATACCTGCGCAGTGTTTGCCCGCAAGCCCGGCGGCGGTTGGGTGGAACGGTTGCCGCAGGATGCGTTGC GCTCGCGCGGTTTCGATGATGCCGACGCCGCGCTGCCGGTGGTGCCACGGGCCTTCCAGGGCTATCGCCTGTTGCAGGAATACTTCGCCCTGCCCCACCG CTTCCTGTTCGTCGACTTCACCCAGCTGAGCCGCGCGGTCAAGCGTTGCGACGGCCAGGAGCTGGAACTGATCGTACTGTTCGACCGCCACGAGCCCAGC CTCGAAGGCAGCGTCGGTGCTTCGCAATTCCTGCCGTTCTGCACCCCGGCCATCAACCTGTTTCCCAAGCGCCTCGATCGCATTCACCTGTCGGAACGGG TCAACGAACACCACGTGATCGCCGACCGTACCCGGCCGATGGATTTCGAAGTGCATTCGCTCAGCGGCCTCACCGGCCACGGCACGGGGCCGGAGCAACC GTTCCTGCCGTTCTATGCCGTGCGCGATCCCTCCCGCTATGGCCGCGACCAGGCCTATTACACCGTACGCCGCGAGCCACGCGTGCTGTCCAGCGACCAG CGCCGCAACGGCCCGCGCTCGACCTACATCGGCAGCGAAACCTTCGTCAGCCTGGTCGACAGCCAGCAGGCGCCCTATCGCCATGACTTGCGCCAACTCG GCGTGACGGCGCTGTGCACCAACCGCGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCAAGACCGATTTCACTTTGGCCGACAGTGCCCCGGTCGGCGC GGTGCGCTGCGTGGCCGGGCCGAGTCGCCCGCGTGCCAGCCACGCCCACGATGCCAAGGCCTGGCGGCTGATCAGCCAGTTGTCGCTGAACTATCTGTCG TTGAGCGAACAAGGCCAGGGCGCCGCCGCCCTGCGGGAACTGCTGCGCCTGTACGGCGACAGCAACGATGCGGCGCTGCAATTGCAGATCGAAGGCCTGC GGGAAGTCAGCAGCAAGGCCTGCACCCGACGCTTGCCGATGCCCGGCCCGATCGTGTTCGGGCGTGGCCTGGAAATCACCCTGGAATTCGATGAAAACGC GTTTCGCGGCACCGGGGTGTTCCTGCTCGGCGCGGTGTTCGAACGCTTCCTGGCACGCTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACC ACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCGGACGTCGTCCGACCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTACCCTGGACGCGATGCACCAGGAACCCTGGGAATACGATTTTTTCCAGGCGTTGCGGCGCATCGAGTGCGAATTTCCCGCCCTGCCGCGCCTGGGCCA TTCCTTGCGCCTGGCCGATGACCCGCTGCGTCTTGGGCAACAGGCCGAGTGCACATTCGCCCCGTCGACCCTGGCCTCGGTGCAGCCGGGGGGCGACGGC ACACCGGCGCGCCTGGAGCAGTTCTTCTTCGGCCTCGGCGGCCCCAACGGCCCGATGCCGCTGCACATCACCGAATACGTGCGCGAACGCCAGCGCAACA ACGCCGACAGCACCAGCAAACGCTTTCTCGATGTGTTCCACCACCGCCTGCTCAGCCTGTTCTACCGGGCCTGGGCCGAAGCGCGGCCGACGATCAGCCA TGACCGCCCGGACGATGACTACTGGTCGGCGCGCCTGGCCGCCCTCAGCGGTCGGGGCATGCCGAGCCTGCTCAAGCAGGGGCTGATTCCCGACACGGCG
Amino Acid Sequence
>type VI secretion system protein ImpG
MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQMQADPD EGSLSSGFPLPRDTVLRAALGRETQTCCEYRTAHAVTLWPLQVSQAEYFGNPSAVLGRLAASEPKAKAGLRITLRTGAELPFNSLALDNLPLYLSGADEQ PFRLYEQLLGNTCAVFARKPGGGWVERLPQDALRSRGFDDADAALPVVPRAFQGYRLLQEYFALPHRFLFVDFTQLSRAVKRCDGQELELIVLFDRHEPS LEGSVGASQFLPFCTPAINLFPKRLDRIHLSERVNEHHVIADRTRPMDFEVHSLSGLTGHGTGPEQPFLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQ RRNGPRSTYIGSETFVSLVDSQQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVGAVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLS LSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKACTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRT TERGEIMRWKAKPGRRPTL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site