Pseudomonas synxantha BG33R, PseBG33_5532

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004519 endonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.540.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 716 751 1.4E-5
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 712 747 3.8E-7
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 657 688 2.5E-5
CDD cd14742 PAAR_RHS - - 104 225 8.09978E-30
Pfam PF20148 Domain of unknown function (DUF6531) IPR045351 Domain of unknown function DUF6531 296 370 3.0E-22
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 584 624 2.1E-4
SUPERFAMILY SSF54060 His-Me finger endonucleases IPR044925 His-Me finger superfamily 1289 1432 7.65E-15
Gene3D G3DSA:2.60.200.60 - - - 156 225 3.5E-14
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 615 645 0.008
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 673 702 1.3E-4
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 816 854 5.3E-5
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 492 528 2.5E-5
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1300 1319 1.9E-11
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1220 1240 1.9E-11
Gene3D G3DSA:2.180.10.10 - - - 701 899 2.7E-29
Gene3D G3DSA:2.180.10.10 - - - 900 1331 6.2E-78
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 732 772 6.8E-4
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 1140 1170 3.1E-6
MobiDBLite mobidb-lite consensus disorder prediction - - 1000 1026 -
Gene3D G3DSA:3.90.540.10 Colicin/pyocin, DNase domain IPR037146 Colicin/pyocin, DNase domain superfamily 1332 1435 5.8E-10
NCBIfam TIGR03696 JCVI: RHS repeat-associated core domain IPR022385 Rhs repeat-associated core 1253 1331 2.1E-25
Pfam PF05488 PAAR motif IPR008727 PAAR motif 169 212 4.8E-9
Gene3D G3DSA:2.180.10.10 - - - 411 589 4.6E-6
PANTHER PTHR32305 - - - 657 1350 8.3E-35
Pfam PF03527 RHS protein IPR001826 RHS protein 1226 1262 4.3E-11
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1277 1297 1.9E-11
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 888 919 0.0072

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.